DreINT0001020 @ danRer10
Intron Retention
Gene
ENSDARG00000099768 | ANKRD7
Description
ankyrin repeat domain 7 [Source:HGNC Symbol;Acc:HGNC:18588]
Coordinates
chr25:3514756-3515548:-
Coord C1 exon
chr25:3515375-3515548
Coord A exon
chr25:3514863-3515374
Coord C2 exon
chr25:3514756-3514862
Length
512 bp
Sequences
Splice sites
5' ss Seq
AAGGTCTCT
5' ss Score
0.9
3' ss Seq
TGTTGGGGTTTGATTGACAGGAT
3' ss Score
6.18
Exon sequences
Seq C1 exon
GCGGTTCAGTGTGAACAAGATCGCTCCGTCTCTTTGCTCCTGGAACACGAGGCCGATCCAAACCTGGTGGACATCAATGGAAACACAGCATTACACCTGTCTGCCCGCATCCCTTCTTTACCCGTAGCACTACAGCTCCTGGAGCACTCAGCCAACATCGACGCACAAAATAAG
Seq A exon
GTCTCTAGATTATTACAGTATTAACTAGGGTGCAACAACACAGACTTCTCATGGTTCGGTTTGGTTTTAGGTCAATATCCCCAGTGTTTACATTTTAAGGCGTAACCGTGTGCATGTTTATCAAGTCGTACAGATGGACATATTTATTATGCACAGAGCCAGTTCAAGAAGTAAATAAAGGAATAGGGGAAATACAATTTTTTTATTTTAATGCATAGCTGAAAAAAAATTAATATCCATATATGTATTGAACCGTAGAGGACGTACCAAACAATTCAATATTAGAGTATTGTAACATCCCTAGTTTAAACCACACTGAACAGCCCTGCAAAAGATACAAAACTTCTCTACTGAATCACTATATGGTAATTCAGTCAGAGGTCAACATCTCAGACTTATCAAATAGCTTATGGCAGGATGCACTTATAAACCGAAAATGATGGCCTTGCATGTTGAAAGGAAAGATGGTTAATGCAATACACTTTTTACATATGTTGGGGTTTGATTGACAG
Seq C2 exon
GATGGCAACACTCCACTGATGCTGGCTTTGATGGAAAACCACGCAGACATGACGGAGCTTTTACTGAAAGAGGGAGCGGATGTTAATGTCAAGAACCAGGAGCAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099768:ENSDART00000166363:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=NA C2=0.167
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(25.0=39.7),PF0002325=Ank=WD(100=56.9)
A:
NA
C2:
PF0002325=Ank=WD(100=91.7),PF127962=Ank_2=PU(7.5=13.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGAACAAGATCGCTCCGT
R:
GCTGCTCCTGGTTCTTGACAT
Band lengths:
272-784
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]