RnoINT0017762 @ rn6
Intron Retention
Gene
ENSRNOG00000006717 | Ankrd26
Description
ankyrin repeat domain 26 [Source:RGD Symbol;Acc:1310736]
Coordinates
chr4:150609063-150612105:-
Coord C1 exon
chr4:150611932-150612105
Coord A exon
chr4:150609170-150611931
Coord C2 exon
chr4:150609063-150609169
Length
2762 bp
Sequences
Splice sites
5' ss Seq
AAGGTATAA
5' ss Score
7.08
3' ss Seq
TTGCTTGTGATGTCTTGCAGGAT
3' ss Score
9.98
Exon sequences
Seq C1 exon
GCTGTACAGTGCCAGGAAGAAGAATGCGCAGCTATACTGCTGGACCACGGGGCTGATACGAACGTGACAGACAGCAGCGGCAACACTGCCCTCCACTACGCGGTCTACTGTGAGAGCACGTCCATAGCAGCCAAACTGCTCGCACGCGGCGCAAATATAGAAGCCAAAAACAAG
Seq A exon
GTATAACGACAGCTCTATTGCCAGCCGAAGACAGAGACACATTGTGAATGTCATTCTCATCACCATGACTGGATTGAGCAAACACACTTCTGTGTATTTTTTAGGAATGTTTTCAGAAAAGATCAGATCATGGGGACTCTAGGTCTAAGTAATGTTTGACTCCATTGGGTGAAATCTAAGATTGAGTATAATTGCCCCTTAAAGATACTTTCATTGTGATAAAAATAATCCACACACCAGTCAGTAGCTCACTGATTAAACCAGTGTCTGATTTCCCTTTTATTGCAGTCATTTATTTGTTTGTAGGGATAGGAGGTGCGTGTGCCCACAGTGGGCATGAGGAGATCAGAGAACAACTTTAGGGAGTTGCTTCCCTCCCTCAACCATACGGGTGTCGGGGTTGACCTGGGGTTGACGGACTTAGCAGAAAGAACCTTTACCTGCTGACCCATCTCTTTCCCTGCCTCCCAACCCAATTGCATTTAAAACTTTTCCTTTTTACCCTTTTAGAAAAATTAGATGTTTTAGGGACTAGAGAACTAGCTCACTGGTTAAGAGCACTTGCTGATTTTCTAAAGACCCGAGTTCTGTTCCCAGCATCCGAATGGTGGCTCACAACCATCCGTAAGTCCTATTCCAGGGACCCAGTCCCCCTCGTTCCTTGTCTTCCATTGCTTTTGTGTTTAGATTGCTTCTTTTTTCTCACTACGACTGTGGGGTGCATTGTTAGGTTATCTAAGAGCTCTCTGACTTTTCCGTGTAAGCGCTTAAAGCCGTAAGCGTCCCTCCCAGACCCTCCTCCGGGTCCCAGAGGTTCTGCTGAGCTCAGCTTTCTTTTCCCTTCCATTCCAGGGACTTTAAAATCTCTCCCGGATTTCTCCCATCTCCTGATGCTGGTGTAGCTTCTTTGCTTTTGATTTCTAGTTTTCTTTCGCTCTCGGAATACAGGAAATGGTTTTGGTTCCTTCGTGTATGTTGTACTTGACCTGTGGTCTAGAGTGTGGTATGTTGTGGAGAAGCTTGAGCCCGCTGAGATGAGGTGTATGTGTTCCGTATCTGCCGTAGGGACTGCTGTGCAGAGATCACTTCATCGCGTTTGGTCGGTGGTGTAGTTAAACTCTGAAGCTTCTTCCTTGAGTTCTACTGTGAATGAGCTATCTAAAGATGAGAGTAGGTGTGACGTCACTCACTGATATCCTACCAGAATCTGACCTTCATGCCCATCCGGATTCTGTTAGTTCATCTGTGATCAGATTACTGTTCATTCTTTTATTATATTAATTTTGTGAGTTCTTTTGTCCTGTTGTTTTGGACGTGATAACTCTCCTTTGTTCCTCTTAAGAAGTTTGGGGGTCCATTTTCTCTTTCCACTATGGGGTCAGGTCATCAGCAAGTGCTTTTTTACCCACTCGGCAGGCTCTTGTAAGGGTATTTTACAGCGGCGACTTGCTCGTTGTGAATTGCCTTTGTGTGTGTGTGAGTGGGTGTGTGTGTGTGTGTGTGTGCGTGTGTGTGTGCGTGTGTGTGTGTGCGTGTGTGTGTGCGTGTGTGTGTGTGTTGTGAAGTGTTCTTATGTCTCATGCAGTTATAAATGATGCAGCACAAGATTTGGCAGTTACTGTCAGGGCTGGAAATAACACTGTTCCCTATGTACACACAGTCCCCTGCCTGGTTACTGGCTGGTTACTAGCTGGTTACTGGCAAGACATGTGATGTGTTTACCTTTTCCTACATGCAGACAGTTCCCCTGGCTGGATACTGGCTGGTTACTGGTGAGCGATGTGGCATGTTTGCCTTTGAAGTCAGTTGGTGTTGTGACACTGTGACTGTTATCTGACATGGTTCAGGTCTTCTCATCCTGCCCTTGATGCCTCTTGTTTCTGATTTTTTTTTTTTTTTTTTTTTAGATTTGTGAGTTTTCTTTTATTGTGATTTCATTGAATAGATTCCCCCATCATTAGCATTCTCTCAGCACCTTTGTCTAGCCCACTGGTTCTTAGGCATTATGTTTGTGTTGGTGATTTATATTTTGCCTGAGACTAAATAGCAAAAACACCTGAGTCTCAATTAAAACGTTACTAGAGTAAAAAACAAATGAAAAACACTAGGGTATCCAGGGTCTTTGTGAGCGAGAGTAACTGCGCCTTGCAGTGGGAACAGCATCCCTTCGCACTGTAAGAGAAACCCCGTAGACCTTTGAGTAACAAGCAGTGGATGTCCATCCATATCTGGGTCTTTTGATGTAGTGCCCATCTCCTTAGTGACTCACTTTAACCAGGAACGTCTGACACTGCTCCCTGGAACCCTGGCGGAAACAGAGGAGAAGCAGCAAGTCTGCGCAGCCTGGGGGAACTTCCACACTCTTATAGTGTTTCAACCTGTTTCCTCAAAACTTCTGTTTTAATGTTTGCCACAAAAACATAATTTTCAAATAAAGCTTGAGTAGAATTGGAGATTTCTGTTACTAGTCATGTCAGTTATTACTGGATATGATCACAGAATCTTCTGGAAATGCTACTTCTAGAGAAGTCAGTGCCATTTGGAAGGCTGTAAGAAGCCTTCTCTGAAGATGCTAATTTTGCTCATTAGTTCAGTAAGACATTTAAAGTTTTTAGTTCTGTGAGAGCTACTGACAACAAAAGTTAACATCACTGCTTTCAAGAGATGCTTGACTGGGCGGGTCGCAGTCACATGATTCCAAAGCGCAGTTCAGTCGAGAAGTCAGTAATTCGGAATTATGGATTGCTTGTGATGTCTTGCAG
Seq C2 exon
GATGACCTAACGCCTATGTTACTGGCTGTAAAGGAAAATAAACAGCATATTGTGGAATTTCTAGTAAAGAAGAAAACAAGTATTCACGCAGCTGATCAGCTTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006717:ENSRNOT00000073562:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.028
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(61.3=100)
A:
NA
C2:
PF127962=Ank_2=PD(33.3=86.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]