Special

MmuINT0015557 @ mm9

Intron Retention

Gene
ENSMUSG00000007827 | Ankrd26
Description
ankyrin repeat domain 26 [Source:MGI Symbol;Acc:MGI:1917887]
Coordinates
chr6:118506214-118509129:-
Coord C1 exon
chr6:118508956-118509129
Coord A exon
chr6:118506321-118508955
Coord C2 exon
chr6:118506214-118506320
Length
2635 bp
Sequences
Splice sites
5' ss Seq
AAGGTATAA
5' ss Score
7.08
3' ss Seq
TTGCCTGTGATGTCTTACAGGAT
3' ss Score
10.14
Exon sequences
Seq C1 exon
GCCGTGCAGTGCCAGGAGGAAGAATGTGCAGCCATACTGCTGGACCACGGGGCCGATCCAAATGTGATGGACAGCAGCGGCAACACCGCCCTCCACTACGCGGTCTACAGTGAGAACACGTCCATGGCAGCCAAACTGCTCGCACACAATGCAAACATAGAAGCCAAAAACAAG
Seq A exon
GTATAACGGCATCTTTCTTTCCAAAATCACCAAAGACACAGAGACACATCGTGAAGGTCATTCTTGTCACCCTGACTGGACTGAGAAAACACTGCTGTGTATTTTATAGGAATGTGTTCAGAAATGCTCAGATCATGAGGTCTCGGGATCTAAGTAATGTTTGAATCCATTGGTTAGAATGTAAGATTGAATAGAATTGCCCCTTTAAGGTACTGTGGCTGTGATAAAGGTAATCCATACACCAGTCAGGATCTCGCTGATCAAGCCAGTGTCTTATTTTCTTCTTACTGCGGTCATTTATTTATTTGTAGGGGTAGGAGGTGCCTGTGCGCCACAGTGGACGTGCAGAGAGCAGAGGACAGCTTTAGGGAGTTGCCCGCCCGGGTGTCAGGGTTGAACTCGGGTTGAAGGGCTTAGCAGTGAGAACCTTCACCTGCTGACCCATCTCTCCCCCTGCCTCCCAAACCAATTGCATTTTAAAAAATGTCCTTTTTACCCTTTTAGAAAAGTTAGATGTTTTAAGGGCTAGAGAAATAGCTCAGAGGTTAAGAGCACTTGCTGACTTACAAAAGACCCGAGTTCTGTTCCCAGCACCTGCCTGGTGGCTCACAATCATCCCTAACTCCTCTTCCAGGGACCCTCTTGCCTTCTACTGCTGTTGTGTTAGGTTTTTTTTGTTTGTTTGTTTTTCCTAAGACTGTGAGGTCCATTGCTAGGCTATTTATCTAAGAGCTCTCTGACTTTTCAGTGTTAAAACAGCTATAAACGTTCCTCCTGGATCCTCCTCTGCGACCCAGAGGTCACCTTTCATTTTCCTTTCATTCCAGGACCTTTTACATTTGCTCCCTGATTTCTTCCATCTCCTGATATTTATGTGGCTTCTTTGCTTTTGATTTCTAGTTTTCTTTCACTATAGTAATACAAGAAGTGATTTTGGTCCTTTTTGCATATGTTAGACTTGATTTGTGGTCTAGGATGTGGTGTGTTTTAGAGAAGCTCGGAGAGGCTGCTGAGACAGGCGTGTATTCCATACCTGTTGTAAGAACTGTTGCGTGAAGATCGCTTAAGCGCATTTGGTCTGTGGCATAGTTTGACTCTGAGGTTTCTTCTTTGAATTCTGATTTGAATGAGCTATCTAAAGATGCGAGTAGGGTGTTGACATCACTCACTGTTATCCTATCAGAATCTGACCTTCACGCCCATCCTAATTCTGGTTCTCTCTGGTCAGATTACTGTTTGTTCTTTTATTTATCGTCCCGTTAATTTTATGAGTTTGTTGTTCTATTGTTTTGGACATGATAGCTTTCCTTTGCTCCTTTTATGAAATCTGGGAGTCCGTTTCCTCGTCTCACTGTGGGATCAAGTCATCTGCAAGTACTTGGTTTTTTTTTTTTTTTTTTTTTTTTTACCCACTGAACCATCTTGGCAGGCTCTTGTATTTTACAGTGGTGGCTTGCTTGTTGTGAATTGCCTTAGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGTGAAGTGTTCTTAGGTCTCAGGTAGCTATAAATGATAGCTTTGCTGGAGATAGCACAAGAGTTGGCAGTTACTTACTTTAGGGGCTTGAGATAATATTGTTCTCTATATGCAGATGGCTCTCCTGATGAGAGATCTGCTGTGTTTGCCCCTGAGGTCAGTTGGTGTTTTGACATCTTGACTGTTATCTGTCATGGGGCAGGTCTTCTCGAATTGTATCGTTGATGCCTCATGTTTTGGGATGCTTCTTTTTTTGAGATCTGTGAGATTTGTTTTATTTTGATTTCATCGAATAGATTCCCCCGGGCATTAGTATTTGTCTCAGCGCCTTTGCCTAGCCCACTGGTTTTTAAGTGTTACATTTGTGTTGGTGATTTATATTTTGTCTAAGATTAAATGACAAAAACACCTGAGTCTCAATTAAAATGATGCCAGCGTAACAAAAAACAAACAAACAAATGAAAAACAGTAGGGTATCCAGGTTCTTCATGAGCAACAGTAACCCTTGCTCCTGCGCCTTGCAGTGGAAACAGCATCCCTTCACACTCTAAGAGAACCCCGCAGACCTTTTAGTAATAAGGGCATGTCCATTGGCATCTAGGTCTTTTAATTAAGTGCCCATCTCCTTAGAGACTCACTTGAAGCAGGAGTGTCTGACACTGGACCCTGGAATCCTGGCATAAACAGAGGAGAAGCAGGGAGTTTGCATCCTAGAGGGAACATCCACATTCTTATAAAGTGTTTCAACCTGCTTCCTCGAAACTTACTTCTTCTGTTTTAATGTTTGCCACAAGAAATAATTTTCAAATAAAACTTGAGTAGAGTTGGAGATCCCCTTTACTTGTCATGTCAGTTTATGAATGGATGGATCTTCTAGGAATGCTGCTTCTAGAGAAGTCAGTGCCATTTGGTGTTTGTATGTAGAAGCCTTCTCTGAGGATGCTAATTTTGCTCATTAATTCAATAAGACATTTATAACTTTTACTTCTGTTAGAGTTACTGACAAAAATGTTAGCACAACTGCCTTCAAGAGATGCTTGACTGGGTGGGTCGCAATCACATAACTCCAAAGTATAGTTCAGGTGAGAAGTCAGTAATTTGTGAATTATGGATTGCCTGTGATGTCTTACAG
Seq C2 exon
GATGACCTAACACCTATGTTACTTGCTGTAAAGGAAAATAAACAACATATTGTGGAATTTTTAGTAAAGAAGAAAGCAAGTATTCACGCAGTTGATCAGCTTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000007827-Ankrd26:NM_001081112:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact





	

	
ORF disruption upon sequence inclusion





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.103 A=NA C2=0.028
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF127962=Ank_2=PD(24.5=39.7),PF0002325=Ank=WD(100=56.9)

							
A:
NA

							
C2:
PF0002325=Ank=WD(100=91.7)

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000108449





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000007971, ENSMUSP00000086136, ENSMUSP00000108449f296A, ENSMUSP00000108449f297A
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr10:27092513-27093348 
HsaINT0008660
(ANKRD26)
Human
(hg19)
chr10:27381442-27382277 
LOW PSI
HsaINT0008660
(ANKRD26)
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr13:17966741-17970806 
LOW PSI
BtaINT0018333
(ANKRD26)
Chicken
(galGal4)
chr1:24067630-24067744 
ALTERNATIVE
GgaINT0109006
([1])
Chicken
(galGal3)
chr1:26093957-26094071 
LOW PSI
GgaINT0109006
([2])
Zebrafish
(danRer10)
chr25:3514863-3515374 
LOW PSI
DreINT0001020
(ANKRD7)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
No suggested primer sequences

				
R: 
No suggested primer sequences

				
Band lengths: 

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"