HsaINT0009185 @ hg19
Intron Retention
Gene
ENSG00000106013 | ANKRD7
Description
ankyrin repeat domain 7 [Source:HGNC Symbol;Acc:18588]
Coordinates
chr7:117876095-117876980:+
Coord C1 exon
chr7:117876095-117876201
Coord A exon
chr7:117876202-117876843
Coord C2 exon
chr7:117876844-117876980
Length
642 bp
Sequences
Splice sites
5' ss Seq
AAGGTATAA
5' ss Score
7.08
3' ss Seq
ATTTCTATCTCTTGCTCCAGAAC
3' ss Score
9.12
Exon sequences
Seq C1 exon
GATGGGTATACTCCACTATTAGTTGCCGTTATTAACAATAATCCAAAAATGGTAAAATTTCTTCTGGAGAAAGGGGCTGATGTGAATGCTTCAGATAATTATCAAAG
Seq A exon
GTATAATTAATAAATAAGATAGCACATAACTAAAGCTACCTGATAGGATTGTGTGTGTGCGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTCCACAAAACACAATATATATGATATTGGGAAAATATAGAACCATAAGACCCGTAGGATGTATGCTCACATGCTTTTGGACAGATTACCTAAACTTTTAGGATTTATTTTTCCCTTTGTAAAATCAAACAGTTGGGCCAGGTATTAACTGGTTATTATTATTATTTATCATTTATTATTAGAATTTAACATTAGACTCTTACATAGATGACCAACTGTTGTAGTTAAATGGGGTCAGGGGACCCAAAGTCCCAAGACACATTCCTTCATGGAATTTTGAGACATATTTTTGAAAACACTAGGCTTCCAGGAAGAAGAGATTGAAAATGATTGAGCTAGCTGCTTCCTAGGTACTGTTCATGTTTAGACTCCATGATATGATCTGTGACTGGCACACTTTTTTGAGCAGATCTGCTGTATTTTTTACATTGTTGCTTTGACTCTTTCTGATAGAGGCCCTACATTTGAGTAGTAAATTGAGAAGACTGAATTTTTAAAATTAGGCATGTTTAAGATCTTTACATGGGCATTCATTTCTATCTCTTGCTCCAG
Seq C2 exon
AACAGCCCTTATTCTTGCTGTCAGTGGTGAACCACCATGTTTAGTAAAGCTTCTTCTTCAGCAAGGTGTGGAATTATGTTACGAAGGTATTGTGGATTCACAGCTGAGGAATATGTTTATTTCCATGGTTTTACTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106013-ANKRD7:NM_019644:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(47.0=86.1),PF0002325=Ank=PU(6.2=5.6)
A:
NA
C2:
PF0002325=Ank=PD(90.6=61.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTATACTCCACTATTAGTTGCCG
R:
CCATGGAAATAAACATATTCCTCAGC
Band lengths:
232-874
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)