GgaINT0109007 @ galGal3
Intron Retention
Description
NA
Coordinates
chr1:26094072-26094713:+
Coord C1 exon
chr1:26094072-26094178
Coord A exon
chr1:26094179-26094590
Coord C2 exon
chr1:26094591-26094713
Length
412 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
TTCTATTTTGGATGCTGCAGAAC
3' ss Score
5.74
Exon sequences
Seq C1 exon
GAGGGATGTACTCCCCTTACTCTTGCTGTCTCTGAACATCATCAAGAGATGGTAGAGCTCCTTCTTAAAAAAGGAGCTGATGTTAATGCTCGAGATCTGTGTGAAAG
Seq A exon
GTGAGGAGATGGTCTAAACTCTGCAAGTCACCTTAGTTGTCTTCAGATTGGACTGATGAGAGTGATGGGAATGAGCACTGAAGTAGAAACACACAGAGAAAGAGTTCCTTGAGTGACTGATGAAAGCAAGTCTCAGCTTGGCTGGTGTCATGCATTATTGTATGCAAGAAAATACTGTTTATGGTAGCCACTGTGGCAGGAAAGTTGCCATTGTGCCAGCAACATTGCTGTTATGCCATTGAGAGTTTTTCAAATTGACGCATAGCTTATATGCAAGTGTTGTTAATTTAGAAGCTTTTTTTCTGTTCATAAAGTGATTTTATTTTTCTTTGAGAGTGAGCAAATGGGAATTAAAATAATTACAATGTCTGACTAAAATTATGTGTTTTGTTTTCTATTTTGGATGCTGCAG
Seq C2 exon
AACTCCACTTATGACTGCTGCATCCGGTGGGGAGCTTAAGGTGGTAAAAGTTCTTCTTCGCTATGGTGCTGATCTTTCCCATAAAGACACTAATGGATGGACAGCTGAGGATTATGCTATTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009104:ENSGALT00000014827:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF138571=Ank_5=PU(27.3=41.7)
A:
NA
C2:
PF138571=Ank_5=PD(70.9=92.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGTACTCCCCTTACTCTTGC
R:
AGCATAATCCTCAGCTGTCCA
Band lengths:
222-634
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]