BtaINT0018339 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008288 | ANKRD26
Description
Bos taurus ankyrin repeat domain 26 (ANKRD26), mRNA. [Source:RefSeq mRNA;Acc:NM_001113767]
Coordinates
chr13:17963113-17966740:-
Coord C1 exon
chr13:17966634-17966740
Coord A exon
chr13:17963181-17966633
Coord C2 exon
chr13:17963113-17963180
Length
3453 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCG
5' ss Score
9.67
3' ss Seq
ATCACATTTTTAATACATAGCAT
3' ss Score
5.04
Exon sequences
Seq C1 exon
GATGACCTCACACCGCTGTCACTTGCTGTAAGTGAAAGGAAACAGCAAATGGTGGAGTTTTTAGCCAAGAAAGAAGCAAATATACATGCGGTTGATAAGATGCAAAG
Seq A exon
GTACCGTTCTTTTTATTTTTAAAAACCTTGGTGTTGTTCTAAGGTGGTAACATCAAGATTAAATTAATAAAATAACTAATTTGTAATCAACACATCATCAGGCAGGTAGAAAATCAGTTATTCTGACTGAGAATCATGAACAACAATATATAGCAGGAATAGATAGCAGGATTCATATTCCTTTATAATATTGACTGATGTCATATGCATCCGGTTCCCTTTTTTTTCATTGATCTTGTAATCACTGAGGGATTTCATATTAGTTTTATTAGCTTTATAAAATATGGATTCTGCTTTTTTAGTTTATCTTATAACACAATATTGAATTTCTTAATTCTTATATAATAATTCTTTAATCTCTACTTTGTATATACTTTTCCTTAAAATTGCATACTGAACATAAAAGACTTGATTTTGTCTTTTGGATGACTCTTTGCTTTAAATTACTTTCTTAGAAGAATGCTGATGTTATTAGTGACAACTTCTTAGTTCTCATATGTATGTTTGTAGCTCAGCCACTGTCGCAAAGCACAGCATCCAGTTCTGGCAGCTGGGCTTCCTAGCCTCCCCCCACACTCAGAAACCTTATGTGGAGCCCACGTGTAAGCCTAGATCTAAACCTCGGTCTTCACAATGAGGTGTCCATTGAGGCTGTTATTTATCTTTTCTGCTAGCAGATAACCAGTGTGGACCATTTTAGGCTGTCAGGGAGGTTCAAGTGCTCCTTCAGGGATTGAGCAGACTTCTCTTTCTTCTTTGTTTCTAGACCTGAACCTCAAGGTGGCTTTCTGTCCTGGGGTGGCGGAACACCTTTTCTTAGGTCATAGGTTCCCTGTCATCCTTCCCAGAGTAGTGGGTGCCAGCTTGCCTGAGAGTCCATAATGACGATTGGCCCCTCATGAGATCTGTTTCCTATAATAATGAAAATCTTCCAGAGGATTTATATGTGCTTCAGCCTTAAATGTCTTCAGTGAAGTGAAAGTGAATGTCCCTTAGTCTTGTCTGACTCTTTGTGACGCCATGGACTATATAGTCCATGTAATTCTCCAGGCCAGAATACTGGAGTGGGCAGCCTTTCCCTTCTCCAGGGGATCTTCCCAACCCAGGGATCGAACCCCGGTCTCCTACATTGCACTGGGATTCTTTACCAGCTGAGCCACAAGGGAAGCCCTTGTTTTCAGAGTCTGCCTCATAAGGAACTCATTCACCAGAAATCCCTAAGTCTGAAGTAAGTTAGTTTGAATTAAGCGAGGTAAGCCCTGTCCCAAAGAAAGGCAATGCCAAAGAATGCTCAAACTACTGCACAATTGGACTCATCTCACACTCTAGTAAAGTAATGCTCAAAATTCTCCAAGCCAGGCTTCAGCAATATGTGAACCATGAACTTCCTGATGTTCAAGCTGGTTTTAGAAAAGGCAGAGGAACCAGAGATCAAATTGCCAACATCTGCTGGATCATGGATAAAAAGCAAAAGAGTTCCAGAAAAGTATCTATTTCTGTTTTATTGACTATGCCAAAGCCTTTGACTGTGTGGATCACAATAAACTGTGGAAAATTCTGAAAGAGATGGAAATACCAGACCACCTGATCTGCCTCTTGAGAAATCTGTATGCAGGTCAGGAAGCAACAGTTCGAACTGGACATGGAACAACAGACTGGTTCCAAATAGGAAAAGGAGTACATCAAGGCTGTATATGTCACCCGGTTTATTTAACTTATATGCAGAGTACATCATGAGAAATGCTGGAGTGGAAGAAACACAAGCTGGAATCAAGATTGCTGGGAGAAATCTCAGTAACCTCAGATATGCAGATGACACCACCCTTATGGCAGAAAGTGAAGAGGAACTAAAAAGCCTTTTGATGAAAGTGAAAGTGGAGAGTGAAAAAGTTGGCTTAAAGCTCAACATTCAGAAAATGAAGATCATGGCATCAGGTCCCATCACTTCATGGGAAATAGATGGGGAAACAGTGGAAACAGTGTCAGACTTTATTTTTGGGGGCTCCAAAATCACTACAGATGGTGACTCCAGCCATGAAATTAAAAGACACTTACTCCTTGGAAGGAAAGTTATTACCAACCTAGATAGCATATTCAAAAGCAGAGACATTACTTTGCCAACAAAGGTCCGTCTAGTCAAGGCTATGGTTTTTCCTGTGGTCATGTATGGATGTGAGAGTTGGACTGTGAAGAAAGCTGCGTGCCGAAGAATTGATGCTTTTGAACTGTGGTATTGGAGAAGACTCTTGAGAGTCCCTTGGACTGCAAGGAGATCCAACCAGTCCATTCTGAAGGAGATCAGCCCTGGGATTTCTTTGGAAGGACTGATGCTAAAGCTGAAACTCCAGTTCTTTGGCCACCTTATGCGAAGAGTTGACTCATTGGAAAAGACTCTGATGCTGGGAGGGATTGGGGGCAGGAGGAGAAGGGGATGGCAGAGGATGAGATGGCTGGATGGCATCACTGACTCGATGGACGTGAGTCTCAGTGAACTCAGGGAGTTGGTGATGGACAGAGAGGCCTGGCGTGCTGGGATTCATGGGGTCGCAAAGAGTCGGACACAACTGAGCAACTGATCTGATCTGATCTGAAACCCTGTCCAGGACTTGCCAGTATCCATTCCAAGAGTAGGGTTATGTCTTCCAGGTGAAACAAAGATGAGCATGGAGATTAGACATCATTCTCAGAAAGATCTGCTGGTTCAGAGTTTGAGCAGGTAGAGAAGGAAGAGTAGTGGTCCTGGCCGGATCTTGATTGTGATTAGTTTTCTGCTCTTGGTGTAATTAGCTGCAATAATTGGAGACAATTATGTTATCTAATGTAGTGAGTTTTTGTATTTTATAAATAAATTTAGGTTCAAATTATATAATGGCTGAGATTCTCTAACTTACAAACCACAAAGAACAGCTAATCACCGTAACTAGTTTCCTGCAACACTTGAATGTTAAAGGTATGAAAAAACACACGTTAGATTTTATTTGGAATTCCAAAGTAGTTCCAGCAATAAAGGTCTAGACCAAATTATTCCATTCTTTGACTGTTTCTCCAAGCATTTTGGGGGCATATTATCTCATTAAATCCTCTTAATCTCCTAGTGAAATAAGGCAGTCAGATCCCAGTTATGTAGAGGAAGACTTTGAATTGAGAAGTAACTTCTCCAGAACGACGAGCAGTCAGTTACAGAGCTAGGATTTCTGAGTTCAAGAGAGTTTTCATAAGCCAAGTTAACTCTAGTTATTTTACTGAGCTATACTGCCCTTAGTTCATGAGTACTTCATTTTCCTTTTCATTCTCCTTTAATTACATGCTAAATAAAATTTGTGGAACTTAGAAACTTGAAATGTATGGGACAATTGAAGTTTTGATATTTGTGATATTTTCTGAAATGGTATAAGACCTTGGTAGTTGTTTTTCATATTGGTGTTAAAATATTATCACATTTTTAATACATAG
Seq C2 exon
CATTCGCCAACTGATTTCTGAATATAAAGAAGAGAGACCTAAAACTCCTCCTGAAAACAGCAACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008288:ENSBTAT00000022622:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=NA C2=0.875
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development