MmuINT0015562 @ mm9
Intron Retention
Gene
ENSMUSG00000007827 | Ankrd26
Description
ankyrin repeat domain 26 [Source:MGI Symbol;Acc:MGI:1917887]
Coordinates
chr6:118504222-118506320:-
Coord C1 exon
chr6:118506214-118506320
Coord A exon
chr6:118504284-118506213
Coord C2 exon
chr6:118504222-118504283
Length
1930 bp
Sequences
Splice sites
5' ss Seq
AAGGTATAG
5' ss Score
7.98
3' ss Seq
TTTGTCATTTTTAAACATAGCAA
3' ss Score
4.43
Exon sequences
Seq C1 exon
GATGACCTAACACCTATGTTACTTGCTGTAAAGGAAAATAAACAACATATTGTGGAATTTTTAGTAAAGAAGAAAGCAAGTATTCACGCAGTTGATCAGCTTGGAAG
Seq A exon
GTATAGTAGTTTATCTTTTCAAACTTTGTGGGTAAGAGTGCTTGCTGTGAGTTTACATCCTTAACACTCTTGTAAAAGCCAGGCATAGCTGTGTGTGCTTATAACCCAAGTGACGGGGAATGGAGAGAAGCCGGTCCCCAAGAGCTTGCTTGCTAACTGGGGTGGATTGTGGAATTTCAGATTCAGTGAAAGACCTTGTCTCGAAACAGGAAGTGGAGCCTAATAGAGGAAGACACCTACTGTCCTCCTCTGGCCTCTGCATGTGTGTGCACCTATACATGTATGCATACACCACACACTACACACACTAAACAGGTAAAACCTGGTGTGATAACAAACACTCAGAAATACAAGTGGAAGAGGAGGAGAAGGAGGAAGAAGGAGAGGAGAAGAAGGAGGAGATTAATTTAATTATTGCTATGTTGGAAAAACATCAGTACCTACATTAGTTGGGTGAACAAGCAGTTATTCACACTAGGCAAGACAACCTCTAGTTGGATTCACCTTCCCATTTACTATGAGTGATATTTGTAACCTGATCTATGATCTTATATTAGCTATACCAATTTCACATTAGTAACATTGACCTCTCAATTTTTTTTCAACATTTTAAACCTCCCTTTCTTTTGACCAGACTGAACATAAATGAAGTTGCAAATCAGCCCGTCTTTTTACTCTTTGTTTTAAATTACTTTTGTGAAGAATGTTCATGTTGTCAACATTATATGCTCTTCTTAATTTTTTTCTGTTTTGCGTCTAATATTCTAATGTATTTCTAATGTATTTTTTTAAGTAGCTTGAGCAGAGGAAAGGGATACTCTTTAATGGATAATCTTTTCCTTTAATGAAAATAAGCCATTGGTGGATAATAATGGGGGAAAAGATAGTTTTAGATTCAGATATTGCCAAGCTTAACACCTGACTTCCTCATATAAAAAGGAGGGTAATATGTCCTGTGGATTATACTGTGGTTGAGGAGGTAGCTCAGTGGGTAAGAGTTCATGATGTGTGAGAGGAGAAGTGCAGTTAGACTCTCCGGGCCCTGTGTAAATAGCCAGGCCAGGCAGTTTGCCTGTAGTCCTAACATGGAGGGGCAGACAGACAGATCCTGGGGACCTGCTGGGCTTGGCTAAGCAGCCAAAAGCACATCTGGTTTAGTGAAAGAGCCTGTTTTAAAGGAGTCCGGTGGAGAGCGAGAAACCAGGAGCTTCCCTTCTGGGCTAGACAGCCTGGCCAGCAAGCTCCCACGATCTGCTTTCGCTTTTCAAAGTATTTAAAATTTGGATTAACAAAGAAGCTTTTCAGCAGACATCTCTAAGTCAAAGTCACTTACACTCCTACAAGACCTAGGCCCTCATGACCAACCATTATAAAAGAACAATTTATCTTCCACTGCAATTAGCGATAAATGGAGAAATTAAATATTAAGGAGAGAAGTCCTGGGTCAGAGTTTGATTAGAAAGGAACAGTGCCCAGACCAAGTCTTAGTCTTCACGTTTTCTGCCCTGGGTGATTGGATACTTCGGTCATAGTAGAGAGTTACCTAGGTGAATGAGCTATTGACCAATCCGTTTAGTTTCAGATTACTATGTAACTGATTTGGCCCAAATGGCCACAGAGAATTGAAGCGTTAATATCGGGGTGAGCCTCAGTATTTTGTGACCACTGCAACATTGTTAGAAACTGTGAATGCATGCTCGTGTCGTGTTGATTCTGCTTGGAACTCCAAGCGAGCTTAACACATATTTATATTTAACCGACTGCCTTCAGTTTATCACCGACATTTCACTGCACATTTGAATCATGTGGGATAGGATCCTGATATTAGCTCTGATTTTGTCTGTAATGCTGTTATGAATTTAATTAATATATTTATAATTTTTTAACCTACCAGAATTAAAACAATATTTTTTGTCATTTTTAAACATAG
Seq C2 exon
CAACAGGCAAATGTTTGAATATGATGGGAAGAGACTACAAAGATCTGAAAACAGCAATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000007827-Ankrd26:NM_001081112:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=NA C2=0.818
Domain overlap (PFAM):
C1:
PF0002325=Ank=WD(100=91.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: