DreINT0001021 @ danRer10
Intron Retention
Gene
ENSDARG00000099768 | ANKRD7
Description
ankyrin repeat domain 7 [Source:HGNC Symbol;Acc:HGNC:18588]
Coordinates
chr25:3512694-3514862:-
Coord C1 exon
chr25:3514756-3514862
Coord A exon
chr25:3512832-3514755
Coord C2 exon
chr25:3512694-3512831
Length
1924 bp
Sequences
Splice sites
5' ss Seq
GCGGTATGA
5' ss Score
7.46
3' ss Seq
ACGTTTTGTTCATTATTAAGGTC
3' ss Score
7.13
Exon sequences
Seq C1 exon
GATGGCAACACTCCACTGATGCTGGCTTTGATGGAAAACCACGCAGACATGACGGAGCTTTTACTGAAAGAGGGAGCGGATGTTAATGTCAAGAACCAGGAGCAGCG
Seq A exon
GTATGAGCGATGCACTTTAATGGATCAGTTCACTGAAACAGAGTTATTTGCTCGTCATTGTTGTCTGCGTTTAAACAGATATACATGGAGAAGTCTTAGAGTCATTATTTGTAGTGGTGGAACAGATCACAAATCTCACAGTTCAGACCACATTATGGTTTTTTAGTCACGGATTGGACCATATTTTCGGATCAACCAAATATGTGAGGAGACTAATGTAATTTGCTTTCCATTTATTACAACAACAGCACTGCAAGACACTTTTGGTTCTAAAAAGCAGAACTTATAGCCTATAGTTTAATTAAAAATAATGTGAATAAATGATCAGCTGAATAAAAGTAAATGGTTAAATATTCAGTACTGTGAAAAATTCACTGTTACTACTGTTGCTGATAACGCTACATGTATAAATCAAACATAATTTCTACAACCCATATTCATTTTAGTCTCATTTTCAATAAATGCTTCAGTTATTCACTCATAAAACTTCATGTTTCATTTCTAGATGTGTCATTTTCGAAGAATTATTCAGTGGCTTATTTTGACGGCTTGTTGTCGCCACCTATTGGTTAAATAATGTAATTGCTGCATACAACTTTTATTTTTGAGCATCAAGTTAAATGCATATGATGGTGATTTTAATCTTTACCATAAACATCAGTGCTTTTATTTAAACTATAACCATTATTCTAGTACGTCTGTGTTATTTGTTATTTGACTGTTTCTAAACTAAAGACTGAATCTCTTTCTTGATTTTTGCATTTTCAGATTTGAAGGATTAATAAACAAATAGAAATCACCATCATTTATATTTTATGTTGCGTGGGTGTTGAGATCCCGATCTTTTATTGATTAATCGTGCAGCTTACACTGGATGCATTAATAAAGGCTAAACAAGTAGTGACAGAAAAAACCTTTAATGAAACCCACCACATCCTGAATAACCCACTACAACTTCCTTCGTTATTATTATATTTTACAGGAAAGCCTAAATGCTTTCATACATGTGATTTGAATGACACGATAGGTGATCTCTCTGTGATCATTACAAATTTAGGATTATCTACCAGTAAAAAAAATTATTAATCCATGGGTCATGTGTGTTCCGAACTGTGGGCTGGGATCTGTATGAATCACAGCTCAACCGTGATCTGTTACACCCTTAATTTGTTGTTTTACTGTCAGTACCATTGGTTTTTTTTATATCTGTATTTATTAATCAGTATCTCCAGGATTTGCTAGTGCAATGGTCCGAAGATTTTGTGTATTTTCACAGCAAAAAACAACTGAGAAGCAAATAATGCCATTAATCTTAAGAAATGTCATCACAAAATGTCATTATTTGAGGCTACAGATATAAATACAAAATCCCTAAAAATTCTGGATGGACTAATTATTATTTGGCATCCTTTATTTATATTTATTTTAGTGCTGTCAAATGATTAATCACATGCAAAGCAAAAGTTTTTTACATAATGTGTGTGTTTACTCAATGTGTATAAATAATCGTGTATGTGTGTGTGTGTGTGTGTATACACATATATATATATATGTATATATAAATAAAACGTGTATATATATATAATACAAAATAATGACAAAATCAAATATTTAGATTTAAATATTAAATTTGTGTTAGATAAAAAGATTCAATTCATAAATAATTAATAATCTTTTTTGCATGTTGCGTTTTTTTTTTTTTTTTACAATTTGTAGTATTTTTTGTAACAAACTAAATAAAATACACCTATAGAAATAAAATAATAATAATAAAAATTATTTTAAAATAAAAAAATACTAATAAAATAATATATATATATATATTATAATAAAATGGATAAAAAAATCAATTACTATCATATAATTTTTGTATTTTTAGTTCTTGTTAACAGTATTATTAATACACGTTTTGTTCATTATTAAG
Seq C2 exon
GTCTGCGTTGATGATAGCAGCGTGCAATGGACAAATCAGCATGGTGCGTTTGCTCCTTCAGTATGACGCCGACATTACAGTAAAAGATGACAAGGGATGGTCATCTGATGATTATGCCGTCATGAATGGACACCACGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099768:ENSDART00000166363:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=NA C2=0.016
Domain overlap (PFAM):
C1:
PF0002325=Ank=WD(100=91.7),PF127962=Ank_2=PU(7.5=13.9)
A:
NA
C2:
PF127962=Ank_2=FE(54.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAACACTCCACTGATGCTG
R:
GGTGTCCATTCATGACGGCAT
Band lengths:
238-2162
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]