MmuINT0004587 @ mm9
Intron Retention
Gene
ENSMUSG00000026774 | 4931423N10Rik
Description
RIKEN cDNA 4931423N10 gene [Source:MGI Symbol;Acc:MGI:1918231]
Coordinates
chr2:23085629-23089410:+
Coord C1 exon
chr2:23085629-23085766
Coord A exon
chr2:23085767-23089372
Coord C2 exon
chr2:23089373-23089410
Length
3606 bp
Sequences
Splice sites
5' ss Seq
TGTGTAAGT
5' ss Score
7.65
3' ss Seq
CACTCTTTTGTATATGACAGGAG
3' ss Score
6.5
Exon sequences
Seq C1 exon
AAATTCTCTCATGTATGCTGTAAGGTGTGACTCACCAGTTATGGTCAACCTTATTCTTCAACAAGGTGTCGACATAAATTTGAAAGATTTATTTGGATGGACTGCTTTACGTTATGCTATTGAAGGTGATCGTGATGT
Seq A exon
GTAAGTAATTCTAATTAACATTCATTATTTCAAATAATCCGTTGCATTCCAAACATAACCCTTGTGCATCAGACACAGTGTCATATTTTCATTTAATTGTTTACTTTAGTCTTATAATGTCCATTTTAGCAGAGAATCCACAAAAGCTGTATTCTATTGCTGCTACTTGAAATTCTATGAAACCAACTAGTTTGGAAAGTACAAGGGAGTCAACCCTCCTTCACAAGTCATAGAAGAGAGGCCAGGAGTGGTGGCGCACACCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTTGAGGCCAGCCTGGTTTACAAAGTGAGTTCCAGGACAGCCAGGACTATACAGAGAAACCCTGTCTCGAAAAAACAAAAAACAAAAAACAAAAAAACAAACAAACAAATAAAAAAACAAGTCATAGAAGAGAAAGAAATTCCAATCATGTCTTTTTTCCTTGTTGATTCTGTTGTTATAGCTTTGCTATGAAAATAACTCCTATAGTATTGTAAGGATAGCTGCTGCTTAGTGGTCATCCTTTATTGATTCAGATTCCTAAGCTTTTGTGGTAATGTTCACATAATCATTAGAACAGTTTCTTCATTTCATATGGATATTATTCTAAATGTGTTCTTTTTCCATTTGTTCAAAACCTCTATTTGCAGTCATCATACCCTAGACCTTCATGAATTGTTACCTAAGAGGATTATGGCTATTCTGCCATTAAATATGTGTTGTGACCACTCCAAAATATCAGCTAGTGTCCAATAGTCCAATAGCAAGAAGAAATCAAAGCGTCTGCTCTTCTTTGACACTTGATTTTATTCTGAAACCCTTTATAGTTTGAATAGCCCCATTTCCAAGTGTGGGTGATTCTAAATCATTCTAGTCAGGGAAGGATCCAATTCTGATTTTTTTTAACCTTTTAAAATTCTCTTATACATTACATTTCAACTGCAGTTTCCCCTCCCTCCCCCCTTCCCAGTCCATCCCCCTCCTCCCTTCTCCTACAGATCTACTCTTCCTCCATTTCCCTTAAATAAAAGAGCAGGTCTCCCAGGATGATCACCAAACATGGCCTAACTGGGCATAAGCTCTCATATCAAGGCTGGAGGAGGCAACCCAATAGGAGGAAAGGGCCCCAAAGTAGAGGCAAAAGAGCCAAAAACACCCACACGTTTATTGTTGGGAGTCACACAAGAACATCTAGCTACACAACCATAGCATATATGCCGAGGACCTAGTGAAGACCAATACAGAGTCTGTGACACTTGCTTTAGTCTCTGTGAGCCCCTATGAGCCCTGCTTAGTTGATTCTATGGGCCATCTTCTCATGGTGTCCTTGACCCCTTTGACTCCTACAGTCCTTTCTCTCTGTCTTCCGCAGGGCTCCTCTGTCTCTATCTAGAGTTTGGCTGTGGGTCTCTGCATCTGTCCCCATTAGTTGCTGGATGATGACCTTCTGACAACAGTTAGGCTAGGCATGGATCTATAAGAATAGCATGACATCATTAGGAATAATTTTATTTTATTTTTAAATTTTTATCATTATTATTATTATTATTATTATTATTATTATTATTATTATTGCCAATTGTCTTAGGGTTTTATTGCTGTGAAGAGACACCAGGACCACAGCAACTCTTATAAAGAACAAACATTTAACTGGGGCTGGCCTACAGTTCAGAGGTTTAGTCCATTATCATCATGGCAAGAAGCATGGTGGCATGCTTGCAGATAGAGTCTAAAGTTGTAGTTGAGAGTTCTACGTCCAGATTGGCAGGTAGCAGGAAGGAAGACTGTGAACCACTAGACCTGGTTTGAGCTTCTGAAACATCAAGGTCCACCCCGTAGTGACACACTCCCAACAAAGTCACACTTACTCCAACAAGGCCACACTTCCTAATACTGCCACACTCTATTGGACCTATGGGGGAACATTTTTATTCAGACCACCACACCAGTCATGTTTGGCTTTATCCTAGGCTATTCTGACTCGGGTTCCTGGCCATCTAGGCAGTGTCAGGCATGAGTTTCTAGTTGGAGCAGTCATTGTTTGGTCACTCCCACAAGTTTTGTCCCACCATTGTCCCAGCACATTTTGCAGGCAGGACAGATTGTAGGTCAAAGGTTTTATGGCTGGGTTGATGTCCTAGTCTCACTGCTGAGCATCTTGTCTGGTTATAGAAGATGGCAGTTCAGGCTCTACATTCTCTATTACTAGAAGACTTCACTAAGGTTACTGCTGTGGATTCCAGGGCCTTTCCACTGCACTAGGTTTCTACATCATCCCCAAATGCCCCTCCCCCACCCCAATTCCAGTTGTTTCCGTATTCTCTCCATTTCTCCCACCCCACACCGTGCCTGATCCTTTCTGTTCCCATTCCCATCTGCCCTGCGTCCACCCATAAAAATCTATTCTATTTCTCCAGTTTCAATTCTTAGTCACTAATTGATAAAAACTTTCCAAGCTACATAAATCTGTCCTTCAAGATTTCAGTATATTTTCAAATTTTTTCTCATAAGCCATTGAACAAATTACCTGTTTTTGGCAAATGTAAGTCCCATAATGTCTTGTCATGTATAAAAAGGCTACACCTTCAAAATCTGTTGGCGATTGTAGTGGTTTGAATGAGAAATGTCTCCTTCAGTCTTAGACATTTGAACACTGGTCCCCAGTTGGTGGCATAGTTTAGGGAGCCTAAAGTGGTGCAGCCTTGCTGGAGGAAGTATGTCGCTGGATCAGGCTTTGAGATTAAAACCCTCACCAGAATTCCAGTTCACCTTGTCTCTTCAATATCTATATTTGAAGACATGGGCTCTCAGCCTTCTGCTCTTCTGCCCCAGGCCTGCTACTTGCTTCTGTGCTTCTCTGCTATGAAGGACTCTTCTTTGGGGTCAGGTGGGTGTTAGATTTAGGTTCTTGTTTTGGTATATATGTTTTTCTTATATTGAAAATAGAGAGGAATAGTTTACCAAGAAGAGGCACAATAGTCAGAGACCCACTCTTTCTCCTCAGTCAGGAGTCCCATAGAAATTCTAAGCTAATAGCTATAATATATGCAAAGAGGACCTGGTGCAGACCATGTAGGCCCTGGGCTTGCTGTTTAGTCTCTGTGAGCTCCTATGTGCCTTGCTTAGTTGATTGAGAGGACCTTGTTCTTCCATCCACTTCACGATTTCTTCCATGGTATTCTCTGAACTCTGAGAGGAGGGATTTGATAGAGACCCCTCATTTAGACTATCTCTACATAATGTCTGGCTGTGAGTCTCTGCATCTGTTCCCACCACAATGGACACTCATTTCTTTGTATCTATAAGCCATAATCAACCTTTCTTTCTATCAGTTGCCTTGGATGTCGTATTTTATTACAATAACAGAAAAGTAATTAATACAACATGTGCTGCCTTTATTCGTCACCATTTCTTTGTAAATTTCTTTATTTAAGTAAAAGCTTATTAAAAATATGCTCAAATTCACAGTTATGAAAACAATACCAACGCACTCTGATACTGCCTGAAATACTTAGTGTGTTTCAGGTTTTCATATCAATTTTAAAGTAATGATTACATATGCCACTCTTTTGTATATGACAG
Seq C2 exon
GAGGACAATGCTTTTGGAGTTAAGAAAGAGAAATCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026774-4931423N10Rik:NM_027635:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF136371=Ank_4=PU(87.8=76.6)
A:
NA
C2:
PF127962=Ank_2=FE(19.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: