MmuINT0015850 @ mm9
Intron Retention
Gene
ENSMUSG00000029517 | Ankrd7
Description
ankyrin repeat domain 7 [Source:MGI Symbol;Acc:MGI:1922446]
Coordinates
chr6:18819233-18820031:+
Coord C1 exon
chr6:18819233-18819339
Coord A exon
chr6:18819340-18819893
Coord C2 exon
chr6:18819894-18820031
Length
554 bp
Sequences
Splice sites
5' ss Seq
CAGGTATAG
5' ss Score
8.73
3' ss Seq
TTGTGAATGTCTTGCTCCAGAAC
3' ss Score
6.85
Exon sequences
Seq C1 exon
GACGGTCACACTCCGCTTTTACTTGCTGTTGCTGAAAATAATGAAAATATGGTAAAATTCCTTCTGAAGAAAGGAGCAGATGTAAATGCATCAGATAAAAACCACAG
Seq A exon
GTATAGGTATAATAAATAATACTAAATAGGATGTCATGTAATTACAGCTTATTAATAATAATATATAAATATGAATATATTCATTAATTATACATCTGTGATATTTTAACCACCTGGTATGATTTAGGGCAAATTACCTATACTTCTCAAATGTTCCTTTTTTTTTTCGATCTATAAAATCAAACTGCTTAATTATTTGGGTAGCTGTAAGTTATTATCATCATTTATAATAACTTTCAAATCTTGCATAGGAGCCAGTGTTGTAGTTAATGGGAGAGAAGAACTAGGGTGCCCAACAGTCCCGCCTATGGAATTTTGAGACCTCTTGAAAGCAGGAGGCTTCCAGGAGGCAGGGTTTGAAAAGCACTGAATCATCTGCTTCCAAGTGACTTTGTGTGTTTAGGTGTCTTCCTTTGGTCTGTCATTGCTGTGCAGTTTTGAGCAGCCAGCACAATGTTTTCCATTTTCTCGATGACTTCCTTCTTAGGGATAGAGGAGGACCTATATTTGAATAATAAGTTGAGAAGAATAAATTTGTGAATGTCTTGCTCCAG
Seq C2 exon
AACAGCCATCATGATTGCTCTGATTGTTGAACCAACAAGTTCTGTAAAACTTCTTCTTCAGCAAGATACGGACCTAGCCCACAAAGATATTTATGGATTTACAGCTGAGGAATATGCTTCATTTAATGGCTTTACTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029517-Ankrd7:NM_029202:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(44.9=86.1),PF127962=Ank_2=PU(10.8=19.4)
A:
NA
C2:
PF136371=Ank_4=PU(85.7=76.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTCACACTCCGCTTTTACT
R:
AAAGCCATTAAATGAAGCATATTCCT
Band lengths:
238-792
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: