HsaINT0013824 @ hg19
Intron Retention
Gene
ENSG00000170653 | ATF7
Description
activating transcription factor 7 [Source:HGNC Symbol;Acc:792]
Coordinates
chr12:53905843-53917168:-
Coord C1 exon
chr12:53917060-53917168
Coord A exon
chr12:53911139-53917059
Coord C2 exon
chr12:53905843-53911138
Length
5921 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
3' ss Seq
TTTGCCCTCCTTCCTGGCAGAAA
3' ss Score
10.33
Exon sequences
Seq C1 exon
AATGAAGTCACATTACTACGCAATGAGGTGGCCCAGTTGAAACAGCTACTGTTAGCTCATAAAGACTGCCCAGTCACTGCACTACAGAAAAAGACTCAAGGCTATTTAG
Seq A exon
GTGAGTGGCACACAACCTAAGCTAAGTCAGTCAGTCAGTAAACTGCATGTACTGAGTGTCTCAACTGCTTATAATTTTATAACTCCATTCTGAATGTTCTGGGGACCCCACGCTGATGAGTGAGTGGCCCTTGTGGAGCAACCAGACCTAGAAAAAAAATGTTTTTGTAGACGATATAGAGCTAATTATCTGTTATAGTTGGGGGTTGAAGGGTAGCAATATTTACCGGGTGCATATTTTGTGTTAGGCATGCTACAGTCTTCCCAAGTCTCTCATGAAATGGATATTATCTACATTTATATGTGAGAAAACTGCACTCTGCACTCAGATTAGGTCATTTAGCCAAAGTTACCAAGCTGGGAAAGTGGTGAAGCCAAGATTTACATCTATGTTTTGTTTTGTTTTGTTTGAGACGGAGTCTTGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCACGATCTTGGCCCACTTCAAGCTCTGCCTCCCAGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGTACTACAGGCGCCCACCACCATGCCCAGCTAATGTTTTGTGTTTTCAGTAAAGACGGGGTTTCACCAAGTTAGCCAGGATGGTCTCAATCTCCTGACCTCGTGATCCACCCTCCTCAGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCGCGCCCGGCACATCTATGTTGTTTTTTTTTTGTTTTTGAGACAGAGTCTTGCTGTGTCACCCAGACTGGAGTGCAATGGCACGATCTCGGCTTACTGCCACCTCTGCCTCCCAGGTTCAAACAATTCTCCTGTCTCAGCCTCCGGAGTAGCTGGGACTACAAGCACCAGCCACCATGCCTGGCTAATTTTTGTGTTTTTAGTGGAAACAGGGTTTCATCATATTGGTCAGGCTGGTCTCAAACTCTTGACCTCAGGTGATCCACCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCTACCGCGCCCAGCACATCTAGGTATTTCTTATTCCAAAGATACTGTCTTGGCCTAGAAAACACATAAACCACAGATGATACATTGGGATATAGGGTACATTTTATCTAATGATAGGCTGACGTTGGTTTCAGTTTGTAATCTATGAGTGCACATAAAATACTGCTAGAAGGCAATGGCCACAGAGTTGTGCTCAGGACATGTGCAATTCTGAAGTTAAAATTACTGTGAATAATTTGCCTATGGTCAATAAAAGCTAATAAATGCTAGTTTTCTTTTTACAAATTAAATTCATAGAACTATTGCTCTCAAACTTTGATATATTGTATTATTTTTCCACTGTATTATTTCAGAGATGTGTTCCCATAGAAAAGGAGTAACTATATCACCAATTTTAAACATCTCTACTTAAATTTTAATTTTAATATGTACTTCAGGGTGCATTCATTCATTAAGCAGATATTGATGGAATGTCTATTCTGTGCCAGTCACTGTTTTTCATGCTGGGGATATAATAGGGAACCAAATAAATTAGATTAAATCCCTGCCCTTGAGGAGCTTATATTTTAGTGGGTGAGACAGACAATAAACAAGATAAATAGGTAAAATATATGACATGTTAGATAACAGTAAATGTTAGAAGAAAAATAAAACAGGGAAGGGTAATATGAAATGTTAGCAGCAGGATAGAAATTTTAGATTAGGTGGCTTTTGAATAAAGACCTGAAGGAAGTGAGGGAGCTATATGCATTTATATGGAAGAAAAGTACTATAGGGAGGAGGATCAGCAACTGCAAAGATGCAAAGTCGCAAGGTACCTGGTACATCTAGGAACATCAAGGAGGCTCAGCTGGAGTTGGGGGTGGAGAGTAGTTGGAGACAAGTAGGGGACGTAATAGCAGCATTTTATGTAGGGTCTCATCAGTCATGGTGAGGATCTCAGCTTTTACTCCACACTGGGGGCCATTAGAGGGTTTTCAGCAGAAAAGTGATATAATTGATCTGACTAGGCTGGGCGCATGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGCGTATCACCTGAGGTCGAGAGTTCGAGACCAGCCTGGCTAACATGGTGAAACTGCTTCTACTAAAAATACAAAAAATTAGCTGGGCGTGGTGGCATGCGCCTGTAATCCCAGCTACTTGGGAGCCTGAGGCAGGAGAATCACTTGAACCTGGGAAGCGGAGGTTGCAGTGAGCTGAGATGGTGCCATTGCGCTCCAGCCTGGGCAACAAGAGGGAAATTCCGTCTCAAAAAAAAAAAAAAAATTGATCTGACTTACATTTGAACAGGACATCAGGGGTACAAGGGCAGAAGCAGGCAGTCCACTTAGGGGCTGTTACGGTAATACAAGCAAGGGATGACGGTAGTGAAAGTGACGAGAGCAGGCTGAATCCAGGATATGTTTTGAAGTTAAAGTGATGAGAGCAGATGGGATGGTATATATGAGAAAAAGAATAAAAAATTACACCAAAGTTTCTGGCTTAAGCAACCACAAGAATGAAGTTGTCATTAATTGAGATAGGGTAAAGTGTAGGGGAAATGGTTTGGGAGGTATATCAGGAACTCAGTTTTGGACAAACTGAGTTTAAGGAGCCTATTAGGCTTACAGGTGGAGATGTCAAGCAGTCAGTTGGTTATATGGATTTGTAATTCAGAGGAAAGGCTGAAGATAAAACTCTGGGAGTCGGCAGCATATAGCTAGTTTTGGTTTTGTTTGGTTTGGGATTTTTTGGAGGCAGGGTCCACCTCTGTCTCCCAGGCTCTCAAGTGATCCTCCCCACTCAGCCTGAGTAACTGGGACCACAGGCGTGCACCACCATGCCCAGCTAATTTTTTTTTGTTATTTTAGAGATGATGTTTTGCCATATTGGCCAGGCTGGTCTCAGACTCCAGGACTTAAGGGATCTGCCCGCCTTGGCCTCCCAAAGTGCTGGAATTACATGTGTGAGTCACCACACCTGGCCATAGTTAGTTTTTAAAGCATTGAAACCAGATGAAGTTCCCAAGGGAGACAGCAGAGCTAGAAAAAGAGAAGTCCCAGGAATGAACCATGGGGTACTCCAACATTTACAGTTCATAGAAATGAGAAAGAACCCACAAGAGACTGAGAAGAAACAACCAGGAAGTGAGGAGGAAAACCAGCTACAGAGCCAAATGTGGTATTCTGTAAATCAAAATAAAAAAGTGTTTCAAGAAGTTCAGTGATTTTAAATCCTGTTGCTCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCATCTCTACTAAAAATAAAAAAAATCAGCCAGGCATGGTGGCGTGCATCTGTAGTCCCACCTAGTTGGGAAGCTGAGGCAGGAGAATCGCTTGAACCCAGGAGGCAGAGATTGCAGTGAGCCAAAATAGTGCCACTGCACTCCAGCCTGGGTGATAGAGCAAGACTCTGTCTAAAAAAATACCAAAAAAACAAATCCTGTTGATGGGCTAAAGAGGATAAGGACTGTTTATCAGTATATAATCTATATACGGTCAGTTTTCCACTTAGTCCCTGCAAGAACTCTGATACATAGTTAATCCATTAAACTACTTATTCTTTTTTTTTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGGGCACCACCACGCCCAGCTCATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTCCCCAGGCTAGTCTCCAATTCTTGGCTTCATGTGATCTGCCCACCTCTGTCTCCCAAAGTGCTAGGATTACAGGTGTGAGCCACCGCACCCGGCCTTACATATTCATTATAGCAAAGATGTATTTAGTTCCTGCTGTGTGGTATAGATATTATGTAAGTACCTGACACATGATGAATAAGACACTGTCACTACCTCTGAGAGAATCATAGGGTCATATAAACCTGTGGATGAGGTAAGGATAGATATCCCAGTTAAAAAGCCCCTAAACTGGGAGCTTCCTAAGGATAGGGTTCCCGTTTTCTTCTCTGTGTACCCATGCCTGGTACATGGATGATGCTCAGTAAAATGTTTGATGAATATATGCTGTGAAAACACAAAGAATAAAACAGTTAATGTACTGAGGGTAACAAAGATGGCTTCACAGAGGACGCAATATTTGAATCTTTTTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCACAATCTCGGCTCACTGCAAGCTCTGCCTCCCGGGTTCACACCATTCTCCTGCCTCAGTCTCCCAAGTAGCTGGGACAACAGGCGCCCGCCACCATGCCCAGCTAATTTTTTGGTTTTTTTTTTTTTTGAGTAGAGACGGGGTTTCACCATGTTAGCCAGGGTAGTCTCGATCTCCTGACCTCCTGATCCGCCCAGCTTGGCCTCTGAAAGTGCTGGGATTACAGGCGTGAGCCACTGCGCCCGGCCATATTTGAATCTTAAAAGAAGACTCAGGCATTCATCAGGATGTCAGAAATACAACTGACTATGGAACGTTTGCCTTTTTTCCACATATTTCTGTTTAAGCAGCCATAGAGGCTATCCGATGTTTAATAAAACTCCTTGACTTGCTGAGTGTGATGACTCATACCTGTAATCCCGGCAATTTGGGAGTCTGAAGCAGGAGGATGGCTTGAGGCCAGCAGTTGAAGGCTGCTGTGAGCTGTGATTGTGCCATGGCACCTCCAGCCTGGGTGACAGAGTGAGACCCTCTAAAAAAATTTTAAAAACATTTGACTAATGAGCAACATGGAGTTACCATTGTATGTAGCTCAGGTAGTTGTGTTTAGTAGTAAAATGTTAGTGTCACTTTAGGTGGAGTGGCATAACTTATAATGTTTTATAATCATTAATGCCTAGCTAATTTTTAGTCAGGAGGGTCTTAAGATTTCTTTGTAGTTTTACATGTTAACTGAACCCGGGCCAGGGACTGGCCATTCATAATATCATTTAATTATAGCTTGATATCTATCAGACTTACCTGTGGTACAACTACATGGTAAAGGAACATTAAAAATAATGGAATAGGCCTGCCACAGTGGCTCACGCCTATAATCCCAGCACTTTGGGAGGCCAAGGCAGGCCAATCACTTGAGGTCAGGAGTTTGAGACCAGCCTAGCTAACGTGGCAAAACCCCATCTCTACTAAAAATTCAAAAATTAGCCAGGTGTGGCAGTGTGCACCTGTAGTCCCAGCTACTCGGAAGGCTGAGGCACGAGAATCACTTGAACCTGGATGGCAGAGGTTGCAATGAGCTGAGATTGCACCACTGCACTCCAGCCTGGGCAACAGAGCAAGACTCAGTCTTAGGAAAAAAAATAAATAAATAAAATAATGGAATAATTCAGTTCCTGTGAGAATTAATCAAAGAGGATGGCTAAAAAGAGATCTATTTTAAATCATCTTTAAAGAAATGAAGGCCAGGCGCAGTGGCTCATGCCTATAATCCCAGCACTTTGAGAGGCCAAGGCAGGAGGATCACTTGAGACCCTATCTCTTAAAAACAAGAAAGAATAGAAGTAATGAATAATAATAAGAGTTGGTAATGAACTATGCAAAGACCTAGAAACCAGACAGTGTAATTAACATGTTGGAGATTCATTTTATTGGAATAGATAGGTTAATTTTGGCCTAGTTCTTCCCTTCTTACAACTTCCCATTTCCTAGCCCATTTATGACTTAGAAGCCAGGATTCTGGGAAGTTTTCCCCAAAAAAAAGATGGGTTTCATTTCCCTTTTGGGCTCCTTTAGAATTATGGCAAAAGGTAGTCCTGCCTCTTTCCCCATTCTGTTTTCTAACCAATTGCTCTCTGCTCTTTGCCCTCCTTCCTGGCAG
Seq C2 exon
AAAGCCCCAAGGAAAGCTCAGAGCCAACGGGTTCTCCAGCCCCTGTGATTCAGCACAGCTCAGCAACAGCCCCTAGCAATGGCCTCAGTGTTCGCTCTGCAGCTGAAGCTGTGGCCACCTCGGTCCTCACTCAGATGGCCAGCCAAAGGACAGAACTGAGCATGCCGATACAATCGCATGTAATCATGACCCCACAGTCCCAGTCTGCGGGCAGATGATGCCTCCTCTGGTGGAGAGGTCCTCAGCCAGAGCTCGCCCGCCCAAGAGCCAAGAGAGATGTCATCTTATCCCCTCCCATCTGCCTTGGACATGGCAATATGGGTGGGGGGAATTGTGTGTTGTGAGTAATGGACAGATATGGGGCTTTTTAGCCATGTGGTCATGTACGTTTGACACCTGTGCTGGGGGCCTCCCAGCCCCGGAGCCTCATAGATCATCCCCCAGGGTGGGGTTTCTGATGCATCCACAGCCAAAGGCCTTTCCAGATGGTCCGAACAATCACCCCTGCCCCATGCACGTGTATCTGTCTCTTTTAACACTAACCCTTGGCACTTCTAGGTTTGGGGTTTCTCAGTTCCCTCTCTTCCCACTAAGCCGTGGCTGTTACCTTTTTGTTCCTTACCAGCATGCCACTTCCTGCCAGATAGAGGGAGGCTAGATTTGATGACATATTACCCGCTGACCCAGCCCCAGCCACCCCATGGACTCAGGACTCAGGTCTCCCATAGCTGCTTATTTACCCGTTTCCTTTTTCCTCTTCCTTAATTCTAGTTAAAACATTCACTTACGGAGAATGTAAGGTTACCTTTGATGTATGAAGTAGCAGTATTTTCCAGTTTTTCCATAAGCTTTATTCCTTCTCTCTACCTGCCACCAAAAAGAAAGAAACCCTCAAGAGTTCTAATTCTTTTTCATCTATTTGCAGAGCTATTTGGGTACCTCATTTTGTCCCTTGACTTTAGTGTAGTGGTGGGGTCTTTCCCACCACCCCACTAAGCCTTGGCAACCTCATTTTGTGGCCTTATTATTAAAGATTGCTTGGTAGTGAAAAGGGAAGGGCCCAGAATCTGACTGGCTGATTCTGTCTCCTCCCCTCCCTCCTTCTTTAGTTTAACCATCAGGGCAGACAGGAACAAAGTATTTCAAAGCTTGTTCCATCAAGTTAGGGATTAATCGATTCCTTTATGTTTTATAAGAGTTTACCGGCCAAAGCATATTGTCATCTTTGGTCATTTTTCTGCTCCTGCTTCTCTCTCTTCATTCCCCTATCAACATTACCGCCCCTGTCTCTCTTCTGTAACTACTTCAGACTCAGCCCTCCTGGAGGCTGTCATGTAGGGGACTCTCGAGTTCCTTTGTTCTACCCCATCTCTCCCCCTCACACATCTGTCTGCTTTTCTGAGCTAGAGTCTTCTGTTCACAAGTGCCCATCACCGTCTGGACTATCTTCTTTCTCTTTCACCAGGTTCCTAGCTTAGCCACTAGGTCTTCCAGGTCCTCCAGAGTTTCTTCAACCCATTTCTTCTCTCTTCTCTTTACATGCAGTGCTCCAGGATCTTGAAGCGTCATAGCCAAGATGCTGAGTGGGTTTACTTGAGTATAAGATTGAAAGGAGGGAGGAAGAGGAGAGGGAAAGTGCAGAACTGGTCCCAGCAAAGGACCCCAGGTTCTGGCCTGGGAAATTGGTGACTATTGCTCTCAACCATTCTTACTTTGAAGAGTTGGGTTGCAGAGGGAGCAATTCATCTCTCTTGTCCCTCTTCCACGTTAAGGCTTCTCATCTCCCCTTGGCTCTGAACTATGCAGTTTCTACCAGGACCATAGGAAGCAATTCAGAGCCAGAGGCCTGTGGATAGATAGGTCAGCTTTAATTGCCTTTCCGTATGAAACCCTTCCAGTTGTCCCAGAGCCACTTTCTGCCATCTGTGCAAGCCAAGAATGTCCTTCTCTCCATCTTTCCTACCTCCATCTTAAACATACATACAAAATAACTGCCAGCTTCCTTTCTTATTTTGTCTCCAAAATTGACTGTCACAGGGGAATGAGAAAATGTTCTAAGCTACAAGATTCCCGTTTCCTTAAAGTGATATCCTGTCCTAGTGAACCAGTCAGGTAACAGGTTCTGCTGCATTTGTTTTAAATTTCCCCTCCTGCTTTTCAGAGCTGGTGCTGAACAGGCCACACCCCTAAAGACAAAGGAGAGAAAACACGGTTTTCTCATCCTCTACCATCAGGTACCCAACAGGAATAGGCCCTGAAGTGATTCAGACTAGCAAATGTTATGGCAGATGGTCAGGACGCAGGTTACCACATCCAGGGACTTCACTTTTGCCTTTAAAAATTCACAGCCGTAACTTGTGCTCAGGACTTCCCCTTTAGCTGGCTGCTCCCTGGGATTTTCTCCTGCTTTAGAGTTTTGTTTCATTTTTTTATTGTCTTGATTTCCCAGTAGCAGCCTTGCCCTAAAGCTTGACTGAGTTTATGGCTCCTAAGGAGCTTTCCTAAGACTCTTGACTATTTTTCTTCCCCCTTCAGTCAAGTGTTTTTACAGTTAAGAATTAATTTGTAACTGCATACATGCCCTGCCAGTCTGTCCCTGTGTTGGGTGGCTAATTTATGTAGCGGGTCTTTTTTATTTCTTAGCCCCCATGACTAATTATCTAGTCCTAACTTCATTTTTATCAGTGGGAAGATGTGTACGGGACCTCAGTGAGGAGCACTGCCAGAACCACAGTAACAAAATGGCACTGAAATAAGGAAGCAGCAGGTCAGAACCCCCTAGATAGTTCTTGAGTTGGTTCTCAGTCTCACTAAGGAGGCAGAATAATTGCTGCCCTGAAACTTCTCTGATAGTCAAAGGTAACTTCACTTACCTTGTTATTGCTACCAGCCATGTGGTCACTCTCCCCAAATCTTTGTCTTCCAGATCCATCTGGACCAGAACCAAACATCATGGAAGGTGTCACTTGGCCCTTCCTAAAGTCCATGGCGTTTCTAGAGGCCTAAGGGAGGACACTTTCAGAAAGGAGCTGAGTGTATGGTGGGTGTCCTGAATTCGTTCATGTGAATACAGGACTCAGGCTTCCCACCCCACTCCAATGTGAGTGCTCGATACACAAGCACTCTAGCTAGCTGCCACGTACCCAAGGCCACAGAGGGAGGGGACAGAACCAGGTCTTCTGGTCTGCTCACTTTCTGCCCCATTCCCCTAACAGAAAGTTTGCTTAGAGTTGAAAAGTCTAAGAAAGCCTCCCACAATACTAGAGAGGCCAACAAAAAAAAAGTCATGCCCCCTTTACTTACTCTTTTGCTGCTGGTTATGCATCTCAAATCTGACTTCCTTAGCCTTCACCTCCCTCCTTGGCCCTAAGCATTAGACCATGTACTCTAAGTAGTGGTTAAAGAGGGACTGAGCAAACTGAACCTCCTCTCGCTCACTTCTCTATCCCTGTTCTGTTGGTTTTGGCTCCTTTCTTGATTCACTGCCCTCTAGCACCACCCATCCTGGTAGATGGAGTGCTTAACCCCAACCGTGCCCTATGTACAGCCTGAACCACCAAACAGACACCAAAAAAATTCTTCCTGTGGTTTCTGGGGCTCCCCTGCTCCACACTGAGAGGCTCCTTAAAGGTGCTAGCCCCTGATACAGCTATCCCCGCCAGTTTTCTCCTTTTTTCATAACTTCCTTCCCATCCCCAAATCATTAATTTTTCATTAATATTGTACATTATATACACAGGAAGGAAATACATTATTTTTTTTAAATTTCATAACCAGCCTGTTTAGATTCCAGTCTTCCTAGCTATATCACATATGCCTTGTTGATATGCTCTTTCTGCTTTCTTTAGACTTAATGTTTGACGGGGGTGGGGGTGTCTGGAAGAACAGGAAAGGTGGGGATCCTAAGGCAGATTAAAGGACTCCCTCCACCCCACTACAGCCTCCCATAACTCTAGTCATCCCTCTCATAGTACAGGACTGATTTCTCTGTGTCTGTTTGTACACACAAATGTGCATACAGACATAAATTCCCCCACCCCATACCAAGGTGGTTACCTAGCAGGAATGAGCGTAGGTGGCTGCTGGCCACCATTACCACCGTCTGCATCAGCTGTGTTGTCTCTCTTTGGGGTAAAGTCCTACCCCAGAATGAGAAAAGGCTGGGGAGAGTAGGGCAGGTTAAAGGAGCTTATGTCCTCTGTAGATGTAGGTTTGTATCATAGCTACTAGGGTTTATTTTTTTAATGGGGGGCTAATAGCACAGAGTTATCTCACCAGCAGTAGCTACTGGTGAGTGATGTTTTAGCTGTAAGAAGTGGCTATGAGCAATAGTTTCACTGACTTTACCTTAGGGCAGTGCCACAGTAATCTGGGAACTTGTTAGAAATACACATTCTCAGGCCCCATCCCAGACTTATTGAATCACAGACTCTGGGGGCAGGGTTTAAAAGCACTCCAAGTGATTCTAATGCACACTAAAGGTTGAGAACCATTTCTTAGGGATAAGCTGGGAAATTTTTACAGGTGTGGAGGATATTTCAAATACATCTTTTGCCTTTGCACTAACATGCTTTCATTTCTTTCAGTCTCTTCCTCCATTCCCTTTAAAGTCTTCCCCATCATATCACTGATCTCAAAAGCTAGATTTGTCTTCATTTTAGTCGTATCCCTAAAACCATGCATTGGTCTGGACAGGAGTTGTCCCATATTCCCTTGCAGACTGGTCACTCCATGTTCTCTGTTACAGTAAGGACCAGCCAAGCTTCAGCTGTCCCATTCCTCCCCCTACAACACACACACCTTTCAGGCAGGGAGGAGATGAGCTTCCAGCCCCAAGAGTGGAGGCTGCCACATCCTAACATAGTATCTATTGAAAAGGAAGCAGTGTGTATCTATGATTATATCTCTGTTCATCTATATATTTTTGACATGTAGCAACACCTCTCCATCTTATCAAGGAACTCAACTCGGTCTGGGTCTCCCCAGTGCCCAGTGGTGGCCTTTGACAGGTAGGAGGATGCAGTGCTGCAGGCTATTTTGTTTTTTGTTACAAAACTGTCTTTTCCCTTTTCCCCTCCACCTGATTCAGCATGATCCCTGTGAGCTGGTTCTCACAATCTCCTGGGACTGGGCTGAGGCAGGGGCTTCGCTCTATTCTCCCTAACCATACTGTCTTCCTTTCCCCCTTGCCACTTAGCAGTTATCCCCCCAGCTATGCCTTCTCCCTCCCTCCCTTGCCCTGGCATATATTGTGCCTTATTTATGCTGCAAATATAACATTAAACTATCAAGTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170653-ATF7:NM_001130059:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.324 A=NA C2=0.792
Domain overlap (PFAM):
C1:
PF0017016=bZIP_1=PD(26.6=45.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)