BtaINT0022540 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005863 | ATF7
Description
activating transcription factor 7 [Source:HGNC Symbol;Acc:HGNC:792]
Coordinates
chr5:26666202-26671702:+
Coord C1 exon
chr5:26666202-26666310
Coord A exon
chr5:26666311-26670820
Coord C2 exon
chr5:26670821-26671702
Length
4510 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
3' ss Seq
TTTGCCCTGCTTCCTTTCAGAAA
3' ss Score
10.79
Exon sequences
Seq C1 exon
AATGAAGTCACATTACTACGCAATGAGGTGGCTCAGTTGAAACAGCTACTGTTAGCTCATAAAGACTGCCCAGTCACAGCACTACAGAAAAAGACTCAAGGCTATTTAG
Seq A exon
GTGAGTGGCTCACAACCTAAGCAACGTCAGTCAGTCAGTAAACTGCATGTAATGAGTGTCTCAACTGTTGATAATTTTATAACCCCATTCTGAATGTTCTGGGGGGCCCAGACAGATGAGTGAGCAGCCTTTGTGGAACAACCAGTCCTGCCAAAAAAAATTTTTGACAACAGCGTAGTTATCCTAATTAACTATCCTTATGGAGATAAAGGGTAGCAATATATATTGGGTACCTGTTCTGTATGAGGCACTGAACCATCTTCCCAGTTCTCTCATGAAATAGATATTACTTCCATTTCTACTCACTCATATTAGTCTCTTACCTGAAGTTACACCGCTGGTGAAGTGGCAGACCCAGGATTCACATCCAGCTCTTCCTTATTCCAAAGCCACCATCTTAGTCTAAAGAGGATATAACAGCAGATGATACCTTGGGGTTTGTCAAGCATTGAGATTTGGTGATATGTTTTATCTTTCTAATGACAGGATAATGTTGGTTTCTTCTTGTAATCTGTGAACGCATAATATAGGGCTAGGAAGAGCTGGTCACAGTCATGCTCAGGATAAGCACAATCCTGAAATTAAAATTACTGTGAATAATTTGTTTATGGACAGTAAAAACTAATCATTTCCCTTTACAAATTAAATTCATAGAAATGTTGGCTATCAAATTTTGATATATTAAATTATTTTTCCACTAACTCTCTTTATCATTTCAAAGATATGTTCCCATAAAAAGAGAGTGACCACATCACCAATTTTAAACATCTTTATTTACATTTAATTTAAATAAAAACTCATTGGAAAAGACCCTGATGCTGGAAAAGATTGAAGGCAAGAGGAGAAGGGAGTGACAGAGGATGAGGTGGTTGGGTGGCATCACCAACTCAATGAACATGAGTTTGAGCAAACTCTGGGAGATCGTGAAGGACAAGGAAGCCTGGCGTGCTGCAGTTCATGGGGTCACAAAGAGTCAGACACGACTTAGTGAATGAACAACAATTTTAATTTTAATGTGTACTTCAGAGTACATTCATTCATCCAGCAGATATTGATTGAACCTGTCCTAGGCACTGTTTTACATGCTGAGGGCGTAATATGGAACCAAATAGATTAAAGTCCCTGCCCGTAAGGGGATTATATTTTAGTGGGTGAGACAGACAATAAACGAGATAAGTAGGTACAATATATATTATGTCAGATAAGAGTAAGTGCTTAGAAGAAAAAAAACAAAACAGGGAAGAAGAACATGAAATGTTAGCAGCAGGGTTGAAATTTTAGATGAGGTGTTTTTTGACTTTTAAGGAATTGAGAGAGCTAGCCACACATTAATATGGGAGAAAAGTACTGCAAGCAAGAGCAGCAACAAATGCAAAGACCCAAAGTGGGAGCATGTCTCACACATTCTAGAATCATCAGGGAGGCTAGTGTGGCCAGACTGGAGAGAATGGGGACTAGAGAGTATTTGGAGATGAGGCAGGAGGAGCAACGGGAGCATTTTTCTGGAGGACCTCATTGGTCATAGAGAGGACTTCAGGTTTCGCTCTGCTTTGGGGACCCACTAGAGGGTTTTCGGCACAATAGCAACGTGACTGATCTGACTTAGTTTGAACAGGGTCACTCTGTAGAGAATGAGGAATGAACGGGCAGAAGCAGGCAGTCTGCTTAAGAGACTGTCACAGTTATGAGCAAAAGAGGATGGAGCCTTGTACCGGTTGGTGGTAGTGAAAGTGGTGAGAAGGGATATAATTCAGGATAGATTTTGAAGTTAGAGTAACAAGGTTTGATGATGGCTAGATGGGACAGTATATGTGAGGAAAAAGAAGAATCAAAAATTGCACCCCCCAAAAAAAATTGCATCAAATTGTTTGGCCTGAGCACCTTACAGGAACAGAGCTGCCATTGACTGAGATGGGGCAAGTGTAGGAACAAGTGGACTCGCTGGTGTATTAGGAGCTCAGATTTGGAAGCCTCTTAGGCTTGCAGGTGGTGCTGTCAACCAGGCAGTTGTATGGGTCTGCAATTCCAAGGAAAAGCTGAAGGTACAACTTTGGCAGTCAGCAGAAGATGGTTAGTTTTTAAAGCCATGAAACTGGATGAGATGCTATTGTCAAGACAGAGTGCATAGGTAGAAAAAGAGAAGTTCCGAGACTGAGCCCTGGGTACTCCAACATTTAGAGGTCAGGGAGATGAGAAGGGACCCATAAGAGACACTGAGAATGAGCAGCCAAACAGGTAGGAGGAAAACCAGCTGAGTTAGCTGGGTGTGGTGTTCTGTAAGCCAAGATAAGAAAGTATTTCAGGGAGTTTAGTGATTAGCTATTTCAAATCCTTTTGATGAGCTAAGGAAGACAAGGACTAAGCATTTATCAGTATGAAGTCTATATACAGTAGGGTTTCTATTCAGTCCCTATAAGAACTCTGACAGGTAGTTAGTCTTTGAAATCACTTGTTACAGCAAAGATATATTTAGTTCCTACTGGGTGGTGTGGACATTGCAGTGAGTGCCTGACACAAGACCAGCGAGACGCTGTCCTATCTTTGAGAGACTCATAGGTAAGGTAAGCACAAATGTGCCGAAGAGCCCCTAGACTGGGGACTCCTGAGGACAGGAAGCCTGTTTATTCTTTGTATACCCCAGTGCCTGGCACACAGCCAATACCTGGTAAATCTTCAGTGAATAAATGAAGTATGCTCTGAAAGCACAGACAATGAAATAGTTAAATTTCCTGAGCATAACAAAACGAAGGCTTCACAGAGGAGGTAATATTTAAGTTGTGAAAGAAGACACAGGCATTTATCAGGAGGTCAAAAATACAACCAACTGTTGGAATTTGCCCTTACTCTACACATCTCTGTTTAAAGAGCCAGAGAGGCTATCCAATGTTTAATGAAACTCCCTGAATGTTGAGCAGCATGTGGATATCTTGAGCCAGATAGGCTATCCAATGTTTAATGAAACTCCCTGAACGTTGAGCAGCATGTGGATATCTTTGTATGCACCTCAGACACTTGTTTAGTAGTAAAATGTTACTGTCACTTTACATGGAGTGGTATAACTCAGAGTAAATGTGTTAAATCATTAATGCCTAGCTAGTTGACAATCAGGAGGGTCTGACATACCTCATGTAGTTGGTTGTGTTAACAACCTTGGCCAAGGACTGGTCATTCATAACATGATTTGAGTGTAGAAACACTGGACTGGAAGAAACACAAGCTGGAAAACACTGGACTGGAAGAAACACAAGCTGGAATCAAGATTGCCGGGAGAAGTATCAATAACCTCAGGTATGCAGATGACACCATCCTTATGGCAGAAAGTGAAGAGGAACTAAAAAGCCTCTTGATGAAAGTGAAGAGGAGAGTGAAAAAGTTGGCTTAAAGCTCAACATTCAGAAAACAAAGATCATGGCATCTGGTCCCATCACTTCATGGGAAGTAGATGGGGAAACAGTGGAAACAGTGTCAGACTTTATTTTTGGGGGCTCCAAAATCACTGCAGATGGTGACTGCAGCCATGAAATTAAAAGACTCTTACTCCTTGAAAGGAAAGTTATGACCAACCTAGATAGCCTATTCAAAAGCAGAGACATTACTTTGCTAACAAAGGTCCGTCTAGTCAAGGCTATGGTTTTTCCTGTGGTCATGTATGGATGTGAGAGTTGGACTGTGAAGAAGGCTGAGCGCCGACGAATTGATGCTTTTGAACTGTGGTGTTGGAGAAGACTCTTGAGAGCCCCTTGGACTGCAAGGAGATAAAACCAGTCCATTCTGAAGGAGATCAGCCCTGGGATTTCTTTGGAAGGAATGATGCTAAAACTGAAACTCCAGTACTTTGGCCACCTCATGCAAAGAGTTGACTCATTGGAAAAGACTCTGATGCTGGGAGGGATTGGGGGCAGGAGGAGAAGGGGACGACAGAGGATGAGATGGCTGGATGGCATCACCAACTCAATGGACGTGAGTCTGAGTGAACTCTGGGAGTTGGTGATGGACAGGGAGGCCTGGCGTGCTGCGATTCATGGGGTCGCAGAGAGTCGGACACGACTGAGCGACTGAACTGAACTGATCCTTAGTGCAACTCCATGCTAAAGGAATATTAAAAGTAATAGAATGATTGCAGTGTTGTGAGCATTAATGAGAGGATAGCTTAAAAAGAGAGATTTATTTTAAATCACCTTTAAAGACATGAATAAGAGGAAGAGTGTTCCAATGGGTTAATGAACTATGCAGAGACCAAGAAGCCAGGTAGTGTAATTAACATGTTGGGGATTTGCTTTATTGGGATGAATAGGTGAATTTTGGCCTAGCTTACTTCCCTTCTCACAACTAGTGGTTTCCTAGCCCATTTGTGCCTTAGAAGCCAAGATTCTGGGAAGTTTCTCCCACTAAAAATATGGGCTTCGTTTTCCTTTGGGGCCCTTTAGAATTTCAGGGAAAGGTAGTTCTGCCTACGTCCACATTCTGTTTCCTAACCACTTGCTCTGTTTTTTGCCCTGCTTCCTTTCAG
Seq C2 exon
AAAGCCCCAAGGAAAGCTCAGAGCCAACGGGTTCACCAGCCCCTGTGATTCAACACAGCTCAGCAACAGCCCCGAGCAACGGCCTCAGTGTTCGCTCTGCAGCCGAAGCTGTGGCCACCTCAGTGCTCACTCAAATGGCCAGCCAAAGGACAGAACTGGGCATGCCCATACAGTCGCATGTGATCATGACCCCACAGTCTCAGTCTGCGGGCAGATGATGCCTCCCCTGGTGGAGGGGTCCCCAGCCAGAGCTCGCCCGCCCAAGAGTCAAGAGAGACGTCATCTTATGCTCTCCCGTCTGCCTTGGACACGGCAATATGGGGGAGGGAATTGCGTGTTGTGAGTAATGGTCAGATGTGGGGCTTTTCTCACACAGTCATGTACGTTGACACCTGTACTAGGAGCCTCCCAGCCCCAGAGCCACATAGATCATTCCCCAAGAGGGAAGTTTCTGATGTACCCACAGCCAGAGGCCTTTATGGATGGTCTGAACAATCACCCTGCCCATGCACGTGTACCTGTCTCTTAACACTAACGCTTGCACTTCTGGGATTCAGTTTCTCAGTTGCCTCTCTTCCCACCCAGCCATGGATGATACCTTCTTGATCCTTAGCAGCATGCCACTTCCTGCTCGGTAGAGGGAGGCTAGAGTTGACAGCACATCACTGCTGCCCCGTCCCTAGCCACCCCGTGGACTCAGGACTTCATCTCCCAGGAGCTGCTTATTGGTCCCATTTTCCCCTTCATAAATTCTAGTTAAAACATTGACTTACGGAGAATGTAAGGTTACCTCTAATGTATGAATTAGCAGTATTTCCCAGCTCTTCCATAAACTTTAGCCCTTCTCCCTACCAGCCACCAAAAACAAAAAGAAATGAAATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005863:ENSBTAT00000007704:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.297 A=NA C2=0.819
Domain overlap (PFAM):
C1:
PF0017016=bZIP_1=PD(26.6=45.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]