RnoINT0022343 @ rn6
Intron Retention
Gene
ENSRNOG00000015269 | Atf7
Description
activating transcription factor 7 [Source:RGD Symbol;Acc:1304940]
Coordinates
chr7:144136325-144141031:-
Coord C1 exon
chr7:144140923-144141031
Coord A exon
chr7:144137194-144140922
Coord C2 exon
chr7:144136325-144137193
Length
3729 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
3' ss Seq
TTTGCCCTCCTTCCTGGCAGAAA
3' ss Score
10.33
Exon sequences
Seq C1 exon
AATGAAGTCACATTACTACGCAATGAGGTGGCTCAGTTGAAACAGCTACTGTTAGCTCATAAAGACTGCCCAGTCACTGCACTACAGAAAAAGACTCAAGGCTACCTAG
Seq A exon
GTGAGTGATTCATAACCTAAGCAAAATCAGTCAGTTGGTAAATCACAGGTACTGAGTATCTTAGCTTAAAATATATATGTATATATATATTTTTTTTTTAAATCTGTAATCCTAGTAAGCAAGAGGATCAGTAGTTCAAGGTCTTCAATTATAGCCAAAGTTTGAGGCAAGCCTGAGCTGCATGAAACTTTCTTTCAAATAAAAAAATAAAGCTTTGACAGTAGTGCAGAGTTACCTATAACCACTGGAGAGAAGGAGTAGCATGCAGTATTTCTTGAATGTTTTATTTAAGTGCTATACTGTTTTCACAGTTCCCCCATGAAGTAGCCATTCCATCTATAAGTGAGAAAACTACTCAGATTAGATCACTTATCCAAGTCAAACAGTAGGAAAGTGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGGAAAAAAAAAAAAAAAAAAAAAAAACAGTAGGAAAGTGGTAGAGGTCTTTTAATCCCAAAGACTGTCTTGGCCTAGAGAGCAGATGAACAGCAGCAAATGATGCTGCTTAGAAACTGAAAAGTTGGGACTTGAGGGAAGATTTCATCTTTCCAATGATAGCCCAGTCTTGGTTTCAATTTGTAATTAGAGATTTCTACAAAATTGTGCTCAGCATTAATAGTGTTACAAAATATATATGACAATGAAAAATTTGTTATAGATAATTAAAACTAATAATTGCTAGTTTTCCTTTACATATTAAATAAATACATAGAAATACTGAATATAGCAAATAATTTTTTCACTAGTTGCCTTTATCATTTCAGAGATGTAAAATATTTCTCAGAGATTCTGAGAAAAAAATTAAGAATCTTTATTAAATTATTTATTTAAATGTTAATGTGTACTTCCAGGTGTGTTGATTTGTTAAGTAAGTACTGACCGAATTGTTGTTCTGTGCCAGGCACATCCTGGGTGTCACAGGAACCAAACAAGTTAGGTTAGATCTGCGTCCCTGAAGATCTTGTATTTTAGTTTGTAAGACAGATTTTTTAAAAAGGCGAGATATGTGGTTTGTGGTAAATGTAAAAAAAGAAGATGATGCAGCTGGGGTATGGAGAGATTGCTCAGGGGATCAGGGCATTTACTGCTCTTGCAGAAGACCTGCATTCAGTTTCCAGCACCCATAACTATCTATAACTGCAGTTCTAGGTGTCTGAGATCCTCTTCTGGCCATCTCAGGCACCAAGCATGTACATGGTTCATGGATGTACGTGTGGCTCTGGCTGCCCTGGAACTCTATATGTAGATCAGGCTGGCCTTGGCTCATAGAGATATGCTTGCCTCTGCCTCCAAAGTGCTAGGATTAAAAGCATATACAGTCAAACACAGCATAAATCTTATTATAATAATAATAATAACAACAACAACAACAACAACAACAACAACAACAATATAGCTGGAAATGGTGCTATAAGAATTCAATCCCGGGCTGGGGATTTAGCTCAGTGGTAGAGCGCTTACCTGGGAAGTGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAAAAAAAAAGAACCAAAAAAAAAAAAAGAATTCAATCCCTGCACCCAGAAGACTGAGACAGGAGGTTCATGAATTCAAGCCCATCCTGAGAAACCTTGTCTCAAAAGTACAAACAAAAAGAGAAGGAAGAGAAGGGTTAGGCTTGGTGGTCCACACCTGGAATCCCAGCACTCAAGAGACAGAAGTTGGAGGATTACTGCAAGTTCAAGGCCAATCTGACCTACATCATGAATTCTGGCACTGCCATATACATAGTGAGACCTGCCTCAAACACAGACCATGTGCAATATGAAGGATCCCATCCTCTGCTGGAGACAGCAGGGGTGCACAAGCAGAAAGTAAGGCAGTGTACCTAGATCAACTATTTTAGATCCTGTTCATGGGCTAAAGAGGGTAAGGACTGAGTGTTCTTCAGTGTACAATCAATATATAGTTTTCTACTCAGTCCTTATAATAATTCTTATTAGTGGTGAGTCCATTAAACTACTTACTACAACAAAGATGTGTTTAATCACTACTTTGTGACAACCACATTATAGAGGTACTTGACATAAGACATTGTCTCTACCTCTCAAAGATTCATTGGGTCATTGTGAACCTGTGACTGAGAAGGGACAGATATATCAGTCAAGGACCTCTGGACCGGGAGCTTCTGCTGTGTACCCCAGTGTCCTTACATGTAAACGGTGCTTAGTACGTGTCTGCAGAGTAAGTGAATACATGCTCTGAAAGCACAGGTAACAAGACAGTTTCCTGGGGGTAACAAGAAAGTGTTTACTGAGGCAGCAGTATTTGAATTCTCTTGAATCCATTTGAAAGATGACTCAGATATTCATCAAGAGGTCAACACCCCAAACTCAGACATGGTGATACACACAAGTGTAATCAGAGCTCTCGGGGTGAGAATTTGAGGCCAGCTTGGGCTACATGAGATACCATCACAAAAAAGACAAAACAAAACAATACACTTACTGGAAATTTTTCCCTAATTCCATACATCTCTGTTGAAGCAGCTATACAGACTAACATTTAATAAAACTTGACTAGCAACCATTACCTTTGTATGCAGCTGAGATGTGTAAATGTCAGTAAAATGTTATTGTCACTTTAGATAGAATGGTATAACCTGTAGTAAGTATTTTATATAATCAGTACATGGCTAATTGATAGGAGGCTTACAGACTTTATATGTGTACATGTTTATATCTGTTTTCTGAATCTTGGCTACTTATAGTGTCATTTGATTGTAACTTGGTATTTAATGGACTTACATATAGTGCCAACTACATGCTAAAGGAACATTCTTTAAAATGGAATGGTTTAATTCCTTTGAAAATTAATAGAAGCAGATTAAGGAATCTATTTTAAATTACTTTTGCAAATGGTGGGATGGCTTACCAGGCTTAACAGGTGAAGGTACTTGATGCCTGATGAGCTGAGTTTGATCTAAGAGAACAGAGTCCTGAGAGTTCTCATCTGATCTCCACATGCATGCTTTGGCATGTGTGTGACCATACACACATACATACATGCATGCATACATATACACACATACATATACACATACACCCATACACACACATACATGCATACACACACATACATGCATACACACACATACATGCATGCATACACACACACACACACACACAAATGTAAAGAAACAGAAAAGATATTCATTTTCTTCTACAAACAGAGCAGGTTCAAAAATAATTTTAGATGACTCTGAATTATCTCTAGTCTATCCTCACCTTCAGGTAGTCTTTGTTGACCTCTGGAGCCAGTGGGTCACAGGTCACATCACTTTAAGTCTTTCTTGGAGGGAACAAGCAGCTTTCACTATGGTGATGATTGAGGCTTTACCCACCTAGAGTGTAAACACAAGCCCCAGGAGAGCCTCCCTATCACAGTGTAGTAAATATGATGCTGTGCCTGGCTTCTGGCTCAGATCTTAGGTTTTGTGTCAGAACTTATTATTTTTCAGGCCATTCATGACTTGAGGTCAGAATTCTGGAAAATTGTCTCCAAAAAGAAAGATGAAATTAATTTTCCTTTGTATTCTTTGTGATTATGACAAAGAAGAGTCCTTTCTGTTCCTCTGTCCTATTTTCTAACCACTTGCTCTCTACTGTTTGCCCTCCTTCCTGGCAG
Seq C2 exon
AAAGTCCCAAGGAAAGCTCAGAGCCAACGGGTTCTCCAGCCCCAGTGATTCAGCACAGTTCCGCAACAGCCCCTAGCAATGGCCTTAGTGTTCGATCTGCAGCTGAAGCTGTGGCCACCTCGGTCCTCACTCAGATGGCCAGCCAAAGGACAGAACTGAGCATGCCCATACAGTCACATGTGATCATGACCCCACAGTCACAGTCTGCGGGCAGATGATGCCTCCCATGATGGAGAGGTCCCCAGCCAGAGCTCGCCAGCCTGAGCCAAAAGAGAGATCAACTTATCCCTCCTGTCTGCCTTGGAATTGGCAGTATGGAGAGGGAGAAATTGTGTGTTGTGAGTATGGACAGATGTGGGGCTTTTCTCTTTAGCCACATGATCATGTACAATTAACACCTGTACAACGGGCTTTTGGCCCCAAAGCCACATAGATCATCCCCCAAGGGTAGGGTTTCTTATGATCCTACAACCAAAGGCCTTTCCACATGGTCTGAGCAATCACCCCAGCCCTGATGCATGTGTGCCTCTCTTAACACTAACCCTTGCACTTGTAGGTTTGGGGTTTCTCAGTGTCCTCTCCTCCCCTTGAGCTGTGGCTGATACCTTCTTATCTCTTACTAGCATGCCACTTCCTGCCAGATAGAGGGAGACGAGATTTGATGGCGTGTTACTTGCTGTCCCATCCCCAGCCACCCCATGCACTCAGGACTTTGTCCCCAACAGCTGCTTATTTGTCTCTTCCCCTTCTAAGCGACAGTGAAAACACTCACTTGTTGAGAATGTAATGCATTTAATGTGTGAGGTAGCAGTGCTTCCCGCCTCTTCCCTGGGCTCTACTCCTGTCTGCTACCAAAAACAAACACAGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015269:ENSRNOT00000020527:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.297 A=NA C2=0.792
Domain overlap (PFAM):
C1:
PF0017016=bZIP_1=PD(26.6=45.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]