HsaINT0014190 @ hg19
Intron Retention
Gene
ENSG00000184743 | ATL3
Description
atlastin GTPase 3 [Source:HGNC Symbol;Acc:24526]
Coordinates
chr11:63419943-63426376:-
Coord C1 exon
chr11:63426233-63426376
Coord A exon
chr11:63420048-63426232
Coord C2 exon
chr11:63419943-63420047
Length
6185 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
TGTATTTTCCTTTTTTTTAGGTT
3' ss Score
12.03
Exon sequences
Seq C1 exon
AAGGAAAGTGGCCATTCAAATTGGTTGGGTGACCCAGAAGAACCGTTAACAGGATTTTCCTGGAGAGGGGGATCTGATCCAGAAACCACTGGGATTCAAATCTGGAGTGAAGTTTTCACTGTGGAGAAGCCAGGTGGGAAGAAG
Seq A exon
GTAAGGATGAAAATGACCTTACAGATTAACAACAACAACAACAAAATATGAACTTCAGCATGTACTGTGTTAACCCAATTAAAAACCTTTTATCAAAGAATTTAAAATGGGTAAAGTAAGAAAAGTTAAAAAGTCCCTGTTTTGTCCTGAAATTTTAGTCTGTTGTGGATAAATAGGATTTTCTGACACAGGTATGCGAAGTTGTAGCTCTGATGTCTAGCTGTAGTCTCCTTGGTCTGCTGATTGCATTATTTTAATTTTCTTTTCTGGAAAAACATTTTTGCTAAAAGCTATACAGACTTTTTTGTTTGTACCTAGCAGTACTTTATGTAGTATTCCTTAGGGCTATGTAGCATTTTTAGACTCAGTTAAAAAATATTAATCTGTTGCTGACTCTGTTAATTCCTATTTCAACATGTGTTTCCTTGAATAATTCAGGATACAACTTACTGTGTATGACAGCTTTCCTTCACACACTATTTTTGTGGGTGTGTGTATATCCAACTTGGGGAGAATTTAAAAAACACATAGCTTTTTAATTTGTTTGAAACAGACCTTCTGCCTGTTACATTTTGTGCTCTTAACCAATTAAAGAAGCCAGTGGCAGCCGGGTGCTGTGGCTCACGTCTGTAATACCAACACTTTGGGAGGCCAGGGTGGGCAGATCACAAGGTCAGGAGTTTGAGACCAGCCTGGCCAACATAGTGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCTGGGTGTGGTGGTGGGTGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAAACGCTTGAACCCGGGAGGCAGAGGTTGCAGTGAGCCGAGATCACACCACTGTCCTCCAGCTCGGGCGACAGTACGAGACTCCGTCTCAAAAAAAAAAAAAAAAAGCCAATGGCATTTTTAGTTTCATATTGTGTTTTCCACTGGTATATACCTGTTGATTTGTTTGTGTCTTTTATGAACTGTTATTTTCTGAAATTTTTTTTCAATAAAAGGAAGGAAGATGTGAAAACAACTTTTTATCAAAGTGAATGATTTAAAATTAATACATATTGATTGTTTTTAAGATTCTTAAATAAAATGCATGAATATAGTTTAAAAGGTCAGGTACTACTGTAAGGCTTCTAACAGAAAGCAGCTGTCATGTGTGTTATTCTCCTCTCTACCCAGTTTTCACTTCCCAGAGGCTGATGCTCTTATGTGTTACCACTTCTGTTCTTTACTTCCTTACTCCTGTATGGGTGGCACAGACCTGGCTGTTGTTCTGGGAGTTGAGCAGGGAAATGGCATTGGGGATCTCACTGTTCAGAAGGTGGGCATTCACTATCCCCTAGCTATCAGTAGGGCTTCTTAGCCCCAGTCTCATCTATGCCTTGTAAGCTATGGGCATAGAGCCTCTCCACAGATTTCTTTGTAAGGATCGGGAGGGGTAAGTCATGTGTTTCTTATACAGACTTTCATCCATTACTTCTGTTTTTAGCCCAATCCTATAAGCATGCCTTCACACCTGTTTGTCCTTTTTTTTTTTTTTTTTTTGAGATGTAGTCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCACCATCTTGGTCACTACAGTCTCCGCCTCCCAGGTTCAAGCAATTCTCCTGCCTCAGCCTCCTCATTAGCTGGGAGTACAGGTGCACACCACCATGCCTGGATAATTTTTGTATTTTTAGTAGAGACAGGGTTTCACAATGTTGGCCAGGCTGGTCTGGAACTCCTGACCTCGTGATCCGCCTGTCTCAGCCTCCCAAAGTGCTGGGATTACAGGGGTGAGCCACCACACCTGGCCACCTTTGATATTTTGAAGTGCTGGAGTGTTGGTACTGAATTCTTTTAGCTTTCATACATCTGAAAAATCTTTATTTTGCCTTTGTTTTGGAAAATATTTACTCTTAGTGTAGAGTTCTAGGCCAACGTATTTTTCTCAGTACTTCAAAGGTGTTGCCCCTTTGCCTTTTTGCTGACATTGTTTCTTTTTTTTTTTTTTGAGAGGGAGTCTCTCTGTTGCTCAGGCTGGAGTGCAGTGGTGCGATCTCGGCTCACTTCAACCTCTGCCTCCCGGGTTCAAGCAATTCTCCTGTCTCAGCCTTCTGAGTAGCTGGGACTACAGGCGCGCACCACCACGCCTGGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCGCCATATTGGTCAGGCTGGTCTTGCACTCCTGACCTCAGGTTATTCACCTGCCTCTGTTTCCCAAAGTGCTGGGATTACAAGCATGAGCCACTGTGCCCAGTCTGCTGACATTGTTTCTGACAAGAAATACACTGTTATTCTTATTTTTGTTCTTTTGTACCTAATCTGTCTTTTTTGTCTGGTTGCTTTTTTCTTTAAATTAAAAAAAATTTTATTTTCGTGGGTACATAGGTATATATATTTATAGGGTATGTCTGGTTGCTTTTAAGATTTTATCACTGTTTTTGAGCAAATTATTATGTGTTTTGATGTAGTTCTTTTTTTTTTTTTGAGACGGAGTCTCACTGTGTCGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCAAGGAGCTGGGACTACAGGCGCCTACCACCACGCCCGGCTAAGTTTTTGTATTTTTAGTAGAGACGGGGTTTCACTGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCTGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTATAGGCGTGAGCCACTGCGCCAGGCTGATGTAGTTCATGTTATTTGTATGTGGGTTTTGTTGAGCTTCTTGAATCTGCAGATTTATAATGTTTATCAAATTTGGACATTTTAAGGTTATTATTTCTTCAAGTTTTTTTGGTCTGTTACTCCCTTTGGAGACTCCTATTACATGTGCCTCTTGCTGCTTGAAGTTGTTCCACAAGATGTTCATTTAAAATTCTTTGGCCGGCGCGGTGGCGCACGTCTGTAATCTCACACTTTGGGAGGCCGAGGTGGGTGGATCACCTGAAGTCAGGAGTTTGAGACTAGCCTGACCAACATGGTGAAAACCCATCTCTACTAAATACAAAAAATTAGCTGGGTGTGATGGGTCATGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGTGGGAGAATCGCTGGAACCCGGGAGGTGGAGGTTGCAGTGAGCCGAGATCGCACCATTGCACTTCCGCCTGGGCAACAAGAGCTAAACTCCATCTAAAAAAAAAAAAAAAGGCCAGATGCGGTGGCTCACGCCTGTATTCCCAGCACTTTGGGAGGCTGGGGTGGGCGGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGATGCCCTGTTGCTACTAAAAATACAAACATTAGCTGGGCGTGGTGGCGCCCACCTGTAATCTCAGCTACTTGGGAGGCAGAGGCAGGAGAATTGCTGGAACCTGGGCGGCGGAGATTGCAGTGGGATTAGGAAGAGTACTCAGTCTTGCCTCAGTAATGAGGAATAACAACACTCTGGTTCCATTTAACAAATCTAAACAGCAAGAACAGAAAAAACCAGAGTTTCCAAATTACTTAACTACATCTCAGAATAAAGCTAGATATTTTATAGGAATGCAAAAATAACCAGCACCCAACAAGGGAAAATCCACAAGTCTACATCCTATCAAAAATTTGCAGACATAAAAGAAGCAGAAAAATATAACCCAAATGAGGAGAAAAATCAATCAAAACTGTCTCAGAACTAACACAGATATTAAAATTAACAGAAAACAACTTTTTTTTTTTTTTTTAGACAGTCTTGCTCAACTAAAAATACAAAAATTAGCCGGGTATGGTGGTGTGCACCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCGCTTGAACCTGGGAGGTGGAGGTTGTGGTGAGCCGAGGTTGCGCCATTGCACTCCAGCCTGGGTGACGAGCAAAACTCTGTCTCAAAAAAAAAAAAAAAATAGGCCAGACATGGTGGCTTAGGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGTGGATCATCTGAGGTCAGGAGTTCAAGACGAGTCTGACCAACGTGGTGAAACCCTGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCTCATGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGGACCTGGGAGGTGGAGGTTGCAGTGAGCCAAGATCGTGCCATTGTACTCCAACCTGGGCAACAGAGTGAAACTCCGTAATCCCAGCACTGTGGGAGGCTGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACAGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCTGGGCGTGGTGGCGGGCGTCTATAGTCCCAGCTATTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGCCACAGCGCAAGACTCCGTCTCAAAAAAAAAAAAAAAACAAATTGTATCTTTATTTTGTTTTAGGTTTTCAGGAAAATTAATTGCAACCTGCCCAGTTCCCACATTCTCCTTCAGTTTGCTCTGTTGTTTACATCTTGTAATAGTGTGATACATTTGTTACAATTAATATTTGAACCAATATATTGTCATTAGCTAAAACCCATACATAGTTTACTTTAGGGCTCACTCATTGTGTTGTACATTGGATTTTGACAACTGTATAGTGACACATGCCCACTATTACTGTATCATACGGAATAGTCACACTGCCCTAAACATTCTCTGTAATGTACCTATCTGTTCCTCTCTTCCCTCCCCACAAACTCCTCCACTGATCTTTTTACTGTCTCCATAGTTTCGCCTTTACCAGAATGTCATATAGTTAGAATCATACAATATGCAGCCTTTTCAGATTGGCCTCTTTCACTTAGCAATGCAATTTTAAGATTTCTGCAACTCTTTCGTGTCTTGATAGTTCATTTCTTTTTATTGCTGAATAGTATTCTACATTATGAAGGCACCAGTTTGTTCATCCATTTGCCTGTTGAAGGACATCTTGGTTGCTTTCAAATTTTGACAATTAAGAATAAAGCTCCTATAAATACTCATGTGTTGGTTTTTGTTGAGACATAAGTTTTCAGCTCCTTTGGGTATATACCAAAGAGTTTTGGTTTTTTTTTTTTGGGACAAAATCTCGCTCTCTCACCCAGGCTGGAGTACAGTAGTGTGGTCTCGGCTCACTGCAACCTCTGCCTCCAGGGTTCAAGTGATTCTCCTGCCTCAACCTCTGGAGTAGGTGGGACTACAGGTGTGCACCACCACGCCCATTTTTTTTGTATTTTTAGTAGAGACGGGATTTTGCCATGTTAGCCGGGCTGGTCTCGAACTCTGGACCTCAGGTGATCCACCTGCCTTGGCCTCCCAAAGTACTGGGATTACAGGTGTGAGCCACTGCGCCTGGCCTAATTTTTGTATTTTTGGTAGAGACACGATTTCACCGTGTTGGCCAGGCTGGTCTGGAACTCCTGGCCTCAAGTGATCCACCTGACTTTGCCTCCCTCCCGAAGTGCTGGGATTACAGGCATGAGCCATTGCGCCTGACCTAATTTTTTAAATTTTATGTAGAGACTGGGTCTCACTATGTTGCCCAGGCTGGTATTGAACTGGGCTCAAGTGCTGCTGCTGCCACGGCCTCCCAAACTGTTGGTATTATAGGTGTGAGCCACTGCACCTGGCCAAGATGAATATTTTTTAGTTTCTTTTTCAACAACAGGAAACATCCAAATGCCTGGCTGGGTGATAAGCTAATTGCTTTCAACTTTTGTCTGTTTCAATTGGTGGGGCAATTTTTGCCTTCCATATTGCTCTGTATAACGCTGGATAATCTTCAGTAGAGTGCTGTAGTCAAAGCAAAGCACCTAAATAGTTGTACAGAACCTACAAGCAGGTGCTTAAGGCTCACATAAACATTACCTGTACTTAAGTATATATTACCTGTACTTTTCAATTTCTCCTTTACGGTTTCCTCCTTCTTAGTTTAATCTCTTTTGTTTGTATTTTCCTTTTTTTTAG
Seq C2 exon
GTTGCAGTTGTTCTGATGGATACCCAGGGGGCATTTGACAGCCAGTCAACTGTGAAAGACTGTGCTACCATCTTTGCTCTAAGCACTATGACTAGTTCTGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184743-ATL3:NM_015459:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0226314=GBP=FE(17.5=100)
A:
NA
C2:
PF0226314=GBP=FE(12.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)