RnoINT0022660 @ rn6
Intron Retention
Gene
ENSRNOG00000021203 | Atl3
Description
atlastin GTPase 3 [Source:RGD Symbol;Acc:1309871]
Coordinates
chr1:222764109-222770466:+
Coord C1 exon
chr1:222764109-222764252
Coord A exon
chr1:222764253-222770361
Coord C2 exon
chr1:222770362-222770466
Length
6109 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
TCTCTATCTCTTTTTTTAAGGTT
3' ss Score
11.1
Exon sequences
Seq C1 exon
AAGGAACATGGTCATTCAAATTGGTTGGGTGACCCAGAAGAACCACTGACAGGATTTTCATGGCGCGGAGGCTCTGACCCAGAAACTACTGGGATTCAGATTTGGAGTGAAGTTTTCACTGTGAAGAAGCCATGTGGGAAAGAG
Seq A exon
GTAAGGATGTTGAAAGAAAGAAAGAAAGAAAGAAAGAGAGAGAGAGAGAAAGAAAGAGAGAGAGTAGACATTATAACAGAATAACCAAATGAAAACTTGTATTTATTTTGTTTTCTTGAGATAGGTGTGGTTTTTTGTTTTTGTTTTGTTTTTTTTTTTAAGTAAGTTTGCCAGGCTGGTCTGGAACTTAGTAGGTACCCCCAGGCTGACCTTGAATTCTGAGAACCCTCCTTCAGCTGCCTGTGTTCTGAGATCATAAGTGTGGGGAGAGGAGATGGAGTCACGTGACGAATCCTGGGAATTCCGACTCTGGAGAGCAGCATCAGGGTGCAGATCTGAGTGTATTACCCAGTACATTAGCTTATATACAGTGTGTGAGCCAATCGTGTCTCACCACATCATCACTGTCTTCTAGTGAAAGCCTTGCTTGATGAGGGTACTCTGAAGGAGTGGGGGGGAGTATCCACACCTGTTAGGACTTCCATGAAGACAGGGGAAGCAGCTATGCTCTGGCCTCAGTTCTTTGCTGTTTCACTGGTGTTCTGAGAGCAATCTTAGATCTATGCCACGTGAAACAGATCAGGACTCTTATAGCCTATGGTGCCTAGCTCTCTGTCCCACTTTTTCCTTCACAAGGTTTCCTTATTCCCCACACATGGGTGCATACTACGTTGCTTGATTCTAGACGAGAACTTTAACATATGCAGTGTTACTCCAATCAAATAATAAATTGGATCCTTCTAAGTCATGATAACTCCTAGCTCCTAACGTAATTGCTTTTTTCCTGTTGAGTTATTTGATAGTAAATCCTGCAGTGTACTCATTTAAATCCTTTACTAAGTAGAAAACTTGATGCTGGGAGGTATCAGTATACATTTTGTAATAGAAATGTTTGCTTTGTAAAACTGACTACTCACTCAAACCTTCCTTCCATCCTTGAATTCCGTTTATGAAAGAACCACTCTGATGTTAAACAAAAGTGTTGTCAAATGAAAGAAAGCAACTGTTAGAGCTGTATGTGCTATTCATACGTCTTAGGTCACAACTTGGAGGCCGGCCTGGGCTTCTCAAAGTGTACATAAAAGCACTTGGCATGGTGACTTCTGCCTGTAATTCCCACATTCAAGAGGCTGGGGCAGGAAGATTGGCACACATTTGAGGCCAGCATGCCCTATAAAGTGTGGGACCCTGTTTCAAAGATGACAACAAAAAAGTGGTTTGGAAGTTTACTGCGTTTGTCTGTGACATGAGACCATTTCCATCAGTTTTGAGTACACACATAGCTTCTGCTCTTCAGAGGACTTCCAGTAAGTCCTGTTGTTTCCTCTTTAGTCTCATTTTTCTAGTTAGTAGACACATGTGATTGTGAGCTTTTGTTTAATTGGGTATCATGCCGATGAAGTGTTTTTAGTCTAAACATAAAGCTGAACAGGTATCATCACCACCTGACTAAAACATTTCATTTCCTCAGAAGAGGCCTTTAGTGTTAGCAGTCCCTTCCCATTTCCGTCTTCTTCCAGCTCCAGTCTCTACTGATTCACTATTGACTGAGCTGGCAGGAGGTGCAGCCTGGTTGGAGAACTAGGTGTGCTTGCACTTCACCTTCCTTTCTCTCCCTTCCTTCCGGTCATCGTCTCCCTTTCTCTGCCTTCTTGTCTTTTTTTGTATTGGGGAGTGAACCTAGTGTTATGTGTATGGTAGGCAAATGTCCTGCCTCTCAATTACATCTCCCCATGGAGCCGGCTGTTTATATTATGTAAGTGAAATGATATGTATTTTTTGGGTCTGGCCTCCTTTATTCAGCCTAATTCTCTCTCTTTTTTTTCTTTTTCTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGTGCTTGCTAGGCAAGTGCTCTACCACTGAGCTAAATCCCCAACCCCCAGCCTAATTCTCTTAAAGCATTCATTATTTCTTTACGCCCTTCCATGACAACAATATTCCATTGTATAAGAATACTATACTTTCTAAAAAATACATCTGTTGTGAATATTTGGACTGCTTATATCTTTTTTGTGTTATAAATAATGCTGCCTGTACATGCCTGTGATCTTAGTACTTGAGAAGCTGAGACATGAGTTTCAGATTAGCTTGAGATCCTGTCTAAACTAACCTCTTCCCTCAAAATAAACAAAAACTCAGATCTGGAGAATTAGGTCAGTGTCTCAAGAGCGTTTGTTGTTGCTCTTTTGGGACTTGGGTCCTCTAAAACACTCGTACACACAAAATACTCATGTAGTGATAATTTTGGAGTTTCGGTTCTTTGAAAAACAGAAATATTATGGGAATGTGCTTTCCTTTGAGCCCAGGTGTGTGGATATGGGACTACTTTGGCTCTGATTTGCCTCATGTTCTAGCATACAGGTTGGAAGAGCTATCTTTAGAAGGTATTAGGCATCTTGGGCTTTTTTTTTTTTTTTCTCTAAAGATAGTCACAGGGGCTGCTGAGATGGCTCAGTAGTAAAAAGAGTTGATTCCCTGCATCCATATATTGGGCTAACAGCCATCCATAGACCCAGTTCAGGGGGTCTGATGCCTTGCTCTGGCCTCTGTAGGACTGCATGCACATGATACACAGAAATAACTTGCAGGCTGAACACCCATACACACAAAAAGAAGTAAGTTTAAAAAAATTAAATTAGTCAGCATTGCCGTGTGATACAGAAACACATTTAACATTTTCCCCAAGAAGTTCTTTTGTTGAAGACTTACTGTGAGGTTGTTCATCCCATCAATGGTGACCCACTGGGGAGTTCATACTGACTTGACTCTGAGACAAAGGCTTGCCTTAGCCCCTCCTGTCTGTCTCCAGCTTCCAGTCAACTGCAAAGTGAGCTAATTTGCTCCACCCTGAGCTTCCCACCATGACAGTCAGCCCTGCATTATCATCATTTCTGTCATGTACAGGTTGGCCTCCAGCCCTCAGCAGTAAACAGCTAAAGATGAAAATTTCTGCAGCTGTGACTGAAATAAAATTTTCCTCCCTTAAGTTGTGTATCTCAGGTATCTGTCACAGACATGAAAAGTAAACATATACAAGAGCGCTTCAACCCTAGAAAAACGTGTACATAGATGTTTATGGCAGGTACTGTTTTTTAATAATTTTTGGATGTCTTTTTTTAAATTATTTTGTGTATATGAGTGTATAGTTATTTCTCTACTTTCTTCTTTCTTCTACCCTTCACTCTTCCACCCTTTCAACCTCTTAACCCTAAATAAGAGAGAAAAAGGGGCAGAGAGGAAAGGAAAGAGATCCCTGAATAAAGTCTGGGTTCTGAAATGGGAGACATCACTATACCACTTCCTGCTCATTATGGGTGTTGAGTTCCTTGGGACAAGTTTGATCTTCACTATAAGGCTATCTAATTTCTTCTTGTTTCTTCTTTGGGCTTAACTTCTTAACGACCCAACAACAACCCAACAACATTTTCATTCCCTCTGAGAAGTCCCAATTCCAAATATCACAGTCTCAGAAACTGTTTGAAGCTGGTGATGCAAGAGGTTCTAGTTTCTAGCTCTTGATACTATTGTTTCTTTTACTTTATTTCCTTTTTCTTTTGAGTAAGGTTATATTTTTAAATCAAAGCTGGTCTTCAATGTGATACCTTAGCCTCCAGAGTCCAATATACTTATTTGTTCTTTCTATGTGTATTAACTTATTTGATGGCTTGTATACACCTCTCAATGGCCCCCATTCCCTGTTTTGAGACATCTTGGGGTGGAGGGAATGAGTGTGTGTGTCTGTGTATATTTTTGTGTTGGTGCATATGTGTTTGTGTAGAAGCTTGAGGTCAGAGGAGAGTCTTATCCTTTGGTGTCATCCTTAGGAATGGTTTTTATCTCTCTTGAGACAGTGTCTCATTGGCCTGGAATTTTCCAATTAGGCTAGGATGTTGGCCAGTGAGCTGCACAGGTTCTCCTGCCTCTGCCTTTCCAGAGTTGGTATTACACATGTACACCATGAAGTCTAGGATTTTCACATGGGTTATGGGGATCCAAACTCAAGTCTTCATGCTGTGAGGTAAGCCTTTTACTGACTGAGCCATCTCCTCTCCAACTCCATTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTTAATGGCCAGTTTAGTAGGTAGGAAGTGGTAAGTCATTGTGGTTTTGATTTTAATTTGTATTTTACTAGTGACTAATAGTATTGTATTGAACATTTTTTTCCAGGTACTTAAGAGCCATTTAGACTTCTTTGGAGTAATGTCTATTCAAATCAAATCCAAAGTTTAAAAAAATTTTTATTCTATGTGTATTGGAGTTTTGCCTACGTATATGTCTGTACCAGATATGGTATCTGTAAATATAACTGATATCTGTGCAGGTCAGAAGAGGGCATTGGATCCTCTGGAGCTGCAGTTACATATAAGCTGCCTTGTGGGTTCTGGGAATTGAACCTAGGTCCTCTGGAGGAATAGCAAGTGCTCTTAACCACTGAAGTTCCTGACTTATCTTTGTAAATTAGCCTACAAAGTAGCAGGTTTCCTTGTGATTTTTCATACGTACTTAGTTTTAGTTGACCCTTTCCCTCACCTCCTCCGTTTTGTCCCCATTCCCATTTAAGTATTTTCAGTTCCCAGTATTCCCCCTTCCACTTTAAGATCACATGCGTTCTACTACTCCCACCTCTCTTAGAGCTTCCCAGGGATGGGTGATAGGGGGAAGGGCTACCTGGGGGAAGGACGGAGAGGACAGGAGAGGGCTGAGATCAGGATATAAAGTGAATAAATAAATTAATGAAAAATAGAAGAAAGAAAAAGCTTCCCTTTCCCTCTCTTGTGGGCCCCTTTCTAGGTTTTGGCCTCTACATTTCACCCGCATAAATGATGCATATATGAAAAATTAGAAAACATGGATGTTTGTGTCTCTGAGTTTGGGTCACCCTGGTTAATAAACTACTTTTCATTCCCATCCACTTTCTTGGGAATTTTATTTTTCTTCATGGCTGAATGAAATTTTTTTTGTTTACATTTACCACATTTAATAAACCTAGGGTGAGTTCATTCTTATTGTAAATAGAGAAGCAGTGAACACAGAGGAACATACATCCCTGTAGTAGCATATGGAGTCCTTTGCTATGCATATGGTGGAATAGTGGGATCATACGGGAATTCTATTTTTATTAATTTTTAAGCCACTGCTCTCCATAGTGACTATTCCAGTTTATATTCTCAATAAATAAATATTTCAGAATGTAATTAAAATATTAAAAATGAAATGCCTGGTGGATAGTGAGATAAGTGGCTGGCTGTAACATTGATGTTTCCCTCTGGTGGGATAATTTCATCCTTCTTCATATTGTTGCATGTGCTCATGTGCTGTAACATCTCACTAGGTCAGAGCAGATACTCCCTAGTGAAGTACTCTTACCAAAGCAGCACCTAATTGCTTTCCTGATAGAACCTATAAGCAGCGTTGAGCAGCTCATGTAAATGTTACTTTCAATTTTTCTTTTTGATTTTTTTGAGTCAAGGTCTCATTCTATAGCCTATGCTAGACTATTCCTTATGTATGCCAGGCTGATCTTGAACATACGACTGTCCTCTTGCCTCAGCTTCTCAAGTGCTGGGATTACAGGATTACTGTGTACTGTAGGAATAAACTCTTGTGCATTGTATGTAGGTATCACCTGTCAGTAAAGAGATGAATAGCCTATAGAAAGGCAAGATAGAATAGGAGGTGGGACATCTGATGTAGAAGAATTTTGGGAAGGAGTTGTGCAGGAGATTTACTACCCAGACTTGAAGGAAGTCAGACGTATGAACCTGAGGAGAGATAACCAGCCACATGGCAGACATAAAATAGTGTAAATGGGTTAATTGAGTTATGAGCTAGTTGGGGAACAAGCCTAGTTTAAGGCCTAGGCATTAATTCATAAACAGGCCTCTGTGGCATTATATGGGAACGGGGGTGACATAGAAAAGCCCAAATGGTTACAGTGTACTTTTAATTTACTCTTTGCCTTCTCCTCTTCATTTTAACATTTGATTTTCTTTCTTTATTTCTCTATCTCTTTTTTTAAG
Seq C2 exon
GTTGCAGTTGTTCTGATGGATACCCAGGGGGCCTTTGACAGCCAGTCAACTGTGAAAGATTGTGCTACCATTTTTGCTCTAAGCACTATGACTAGTTCTGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021203:ENSRNOT00000028787:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0226314=GBP=FE(17.1=100)
A:
NA
C2:
PF0226314=GBP=FE(12.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]