MmuINT0020625 @ mm9
Intron Retention
Gene
ENSMUSG00000024759 | Atl3
Description
atlastin GTPase 3 [Source:MGI Symbol;Acc:MGI:1924270]
Coordinates
chr19:7584473-7591472:+
Coord C1 exon
chr19:7584473-7584616
Coord A exon
chr19:7584617-7591367
Coord C2 exon
chr19:7591368-7591472
Length
6751 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
TGTTTTTCTTTTCCTTTAAGGTT
3' ss Score
11.74
Exon sequences
Seq C1 exon
AAGGAAGGTGGTCATTCAGACTGGTTGGGTGACCCAGAAGAACCTCTGACAGGATTTTCATGGCGAGGAGGCTCTGATCCAGAAACTACTGGGATTCAGATTTGGAGTGAAGTTTTCACTGTGAAGAAGCCATGTGGAAAAAAG
Seq A exon
GTAAGGATGTTAAGACAAAGAAAAAAAAGAAGGAAGGAAAGAGAGAAAAGAAAAGAAAGAAAGGAAAGAAAAGATTTAGATATTATTACAGAATAACTAAATGAAAACTTGTGTTTCTTTTGTTTTCTTGAGATAGGAATTTTTTTGGTTTTGGATAAGTTTGCCAGGTTGGTCTGGAACTCGGTAGGTAACACTAGGCTAGCCTTGAGGAGTCATCCTGAGATGGCGCCTTCAGCTGCCTGTGCTCTGGGATCATAGGTATGGGGAGAGGAGATGGAGTCACATGACGAAGCCTGGGAAATCCGACTCTGGAGACCAGCATTAGGGTGCAGATCTCAGTTTATTGCCCAGCATATAAGCTTATATACAGTGTTTGAACCAATCCCAACCCCCTAATCCTTGTCCATTTGTATCTCACCACATCGTCACTGGCCTCCAATGAAAGCCATGCCTGATGAGGTTACTCTGAAGGAGTGGGGGGAGTATCCTCACCTCTTAGGACTTCATGAAGACAGGGGAAGCAGCTGTGCCTTGGCCTCGGTTCTTCTTTGCTGTCTCACTGGTGTTCTAGGAGCAGTCTTAGATCTATGCCATGTGACGCAGATCAGGACTCTTAGAGGAGTCCCAGGAGCCTGCGGTGCCTCGCTCTCCACCCCCACATATAGGTGCACACTACCTTGCTTGTCACTAGATGAGAACTGTAACATACGCTGTGTTAATCCAATCAAAAAATAAATTAGATTCTTTTAAATCCATGATAATTCCTATCTCCTAATGTAATTGCTCTTTTTTCCTGTTGAGTTATTTTGACAGTAGATCCTACAGTGTGCTTATTTAAACCCTTTACTAAGTGGAAAGCTTGATGCAGGGAGGTGTCGATATACATTTTATAATAAAAATTTTTGCTTTGTAAAGCTGACTACTCAAACCTTCCTTCCATTTTTGAATTCCTTTAATGAAAAAGCCACTCTAATGTTAAACAAAAGTGTTGTAAAACAAAAGAAAGCAACTATTAGAGCTGTATGTGCTATTTGTACGTCTTAGGTCACAACTTAGAGGCCAGCTTGAGCTTCTTAAAATGTACATAAAAGAGCTTGGCATGGTGACTTGTGCCTGTAATCTCTGTATTCAAGAGGTTGAGGCAGGAAGATCGGCACACATTTGCGGCCAGCATGGGCTATAGAATGTGGGACCCTGTTTCAAAGACGACAACAAAAAAAGTGGTTTGGAAGTTTACTGTGTTAGTCTGTGACATGAGACCATTTCCATCAATGCTGAGTACACTTGTAGCTTCTGCTTCTCAGAGAGCTGCCAGTGAGTCCTCTTGTTTCCTCTTTGTCTCATTTTCTAGTTAGCAGACACATGTGATTGTAAGCTTTTGTTTAATTGGATCTCATGCTGATGATTCAGGATTTATCCTGTACAAGTGTCTGATTCAGTGGGTTTTAGAATAAACCTAAAGCTGAACAGGTATCGTCACCATCTGACTCTAAAACATTTTATGTCCTTAAAAGAGGCCTTCTTCCAGCTCCTAGTCTCTGCTAATTCACTCTCGCCTGGGCTGTCAGGAGCTGCGGCCTGGTGGAGAACTTGGTGTGCTTGCTTCACCTTCCTTTTTTCCTGCCACCTTCTCCTTTTCCCTGCCTTCTTGTCTTTTTTTGGTATTGGGGATTGAACCTAGTGTGTTCTATCTCTCAATTACATCTCCTCGTGAAGCTGTCTGTTTATGTTAGATAAGTGAGATGATATGTGTTTTTTGGATCTGGCCTCTATTCAGCCTAATTCTCTTATAGCATTCATCAGTCCTTTACTCTCTTCCATGACTGAACAATATTCCACTGTATAAGAATACTGTACTTTTTTTAATACATCAGTTGTGACTATTTGGACTGTGTATATCTTTGGTGTATTATAAATAATGCTGTCTGTACATGCCTGCAATCTTAGTACTTGGGGAGCTGAGACATGAGTTTCAGGCTAGCTTGACATCCTGTCTAAACTAACCTCTTCCATCAAACAAAAACCCAGGGTTAGAGAAGTAGGTCAGTGGCTCAAGGGCATTTGTTGCTGCTCTTTTCGAGGACCTGGGTCCTCTTTTTTTTTTTTTTAAGATTTATTTATTATTATATCTAAGTACACTGTAGCTGTCTTCAGATGCACCAGAAGAGGGCAACAGATCTCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTCGGAACCACTGAGCCATCTCTCCAGCCCTGGACCTGGGTCCTCTTAAACACTCATACACACAAAACACTCAGGTGGTGATAATTTTGGAGTTTTGGTCCTTTGAAAAACAGAAATATTACCAGAATGTGTTTTCCTTTTGATTCCAGGTGTGCAAATATGGGGCTTCTTTGGCTCTGATTTGCCTCATACTCTAGCAGAAGCATAATTTCGCCAGCTGCAGATAGTTTTTGCCATTATGTGATATTTGGAATTCTGGGGACTTTTCAGAGGGTGTGTAAATGTTGTTGGGTTGTTTGGTTGCTGTTGGTCGAGATTTGTTAAGTAGTTATGCCCAAAGAAGAAACAACAGGAAGACTTTAGATATCCTGACAGTGAAGATCAAACTTGTCCCAAGGAACTTGACGCCCTTAATCAGCAGGAAGTAGTCTGGTGACCTCTGACCTCTGACTTTATTCAGGGCCTCTCTTCTTTCCTCTCTGCTCTTTTTTCTTTCTTATGTAGGGTTAAAAGGTTGTAAGGTTAGAAGAGAAAGAGTGGCGAAGGGTGGAAGATAGAAAAACCCACAAGTAGCCAAATAACAACTACACACTCATATACACAAGAATAAAATAAACACATCTAAAAAATAATTAAAAAATACTACCCACCATAAGCATCTATGTACAAGCTTTTCTAAGATTGGAGGTCTCTTGTATATCTCCATGTTTACTTTTCCTGTCTGTGACAGGTACTGGAGATACACAACTTAAGGGAGGAAAGATTTATTTCAGTCACAGCTCCAGAAATTTCAGTCCTTAGTGCTATTACTGAGGGCTAGAGACCAATCTGTACATGACAGGAATCATGATTATGCAGGGTTGACTGTCATGATGGGACGCTCAGGGTGCAACAGATTAACTCACTTTGCAGTTGACAGGAAGCTAGAGACAGGAGGGGCCCAGGCAAGCACATGCCTCAGAGCTATGCCTGGACCACCTACTTCCTCACTCAGTATGAACTCACCAGTGGGTCACCGTTGATGAGATGAATGCCTCACACTGAGTTACCTCAGTTAGACTCAGGAGCTGAGGAACCAGTCTTCAACAAAAGAACTTCTTGGGGAAAATGCTAAATGTGTTTCTGTATCACATGGCAACTCTGACTGGCTTTAATTAATTAATTAGTTATTATTATTATTATTATTTTGGTTTTTCAAGACAGGGTCTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCTTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCCAATGCTGGGATCAAAGGCGTGCGCCACCACTGCCTGGCTGACTTTACTTTTTAAACTTGCTTACTTTTTTCCGTCTGTATGGGTGTTAGGCCTGCACGTATTTCTGTGCATCGTGTGCATGCATCCTACAGAAGCCAGGACAGGGCATTAGATCCCCTGAGCTCGGGTTATGTATGGATGCTAGGAATCAAACTCCCTTAACTACTGAGCCATCTCAGCAGCTCCCGTGACTATCTTTAAACAAACAAACACAATACTTAATATATTCTAAAGAGCTCTACCAACCTGTGTGCCTACTGGCAATGTAGGAAATTCTAGTTTTTCACACTTGATACTAGTTTTTTCTTCTTCTTTTTCTTTCTTTCCTTTTCTTTTGAGTAAGGTTATACACACACACACACACACACACACACACATATATATATATATATATATATATATTTTTTTTTTTTTTTTTTTTTTTTGGTTTTTCCAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCATGCGCCACCACGCCCGGCAAGATTATATTTTTAAATCAAAGCCGGTCTCCAATTTGATACCTTAACCTCCTGAGTTCAATATGCGTTACTTATTTGTTCTTTTTATGTGTATTAACTTATTTGATGGCTTGCACATACCTCTGAATAGTCCCCATTCCCTGCTTGAGACATCTTGGGGTGTGTGTCTGTGTATATTTTTGTGTTGGTGCATATGTGTTTATGTGCTTGTGTAGAAGTGTCATCTTTAGGATGCTGTTTATCTTGAGACAGTGTCTCATTGGCTTGGAGTTTACCAATTAAGCTCGACTGTTGGCCCGGGAGCTGGGGGTTCTTCTGCTTTGCTTCTCCAGAGTTGGGGTTACAGGTGGACACCATGAAGTTTTAGGATTTTCACATGGGTTGTGGGGACTCAAATTCAGGTCTTCATGCTGTGAGGCAAGCCTTTTACTGACTGAACCATCGCCTCTCCAATTACAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACTTAATAGCCAACTTAGCAGGTATGAAATGGTAAGTCATTGTGGTTTTGATTTTCATTTGTATTTTACTAGTGATGAATAGTATTGAATTTTTTTTTTCAGATGCTTAAGAGCCATTTAGACTTCTTTGGAGAAATGTCTATTGAAATCAAACCCAAAGTTTACAAAAATTTTTATTTTATGTGTATTGGTGTTTTGCTTATATATAAATCTGTACCACATATGTAACTGGTATCTGTGAATATATAATTGATATATGTGAAGGTCAGAAGAGGGCATTGGATCCTCTGGAACTGGAGTTACAGATGGTTATAAACTGCCATGTGGGTGCTTGGAATTGAACCTAGGTCCTCTGGAAGAGTAGCAAGTGCTCTTAACCACTGAACTGTCTCTCTAGTTCCTGACTTAACTTTGTAAACTAGCTTACAAAGTAGCAGGTTTCATTATGATTTCTCATACATACTTAAGTTTTAGTTGACTCTTTATCTCACCTCCTCCATTTTGTCCCCATTCCCATTTAAATATTTTCAGTTCCCAGTGTTCCTTCTTCCACTTTCAAATCATGTGCCTTCTACTACTCCCACTTTTCTTAAACTTCCCAGGGATGGACGATAGGGGGAGGGGCTACCTGGGAGAAGAACTGAGAGGAAAGGTGGGGGCTGACATCAGGATGTACAGTGAATAAATAATAAATAAATGAAAAGTAAAAGGAAGAAAAAGCTTCCCTTTCCTTCTCTCGTGGGCCCTTTTCTAGGTTTTGGCCTCTACATATTCATCCACATAAATGGTGCATATATAAAAAATGAGAAGCCGGATCTGCATGTGAAAGAAAACATGGTGTTTGTCTTTCTGAGTTTATGTCACCGATGTTAATATACTATTTTTCATTCCCACCCACTTTTTTGGGAATTTCATTTTTGTTTACATTTACCACATTTAAATAAATCTAGGGTGAGTTCATTTTCTTTTCTTTTTCTTTCTTTTTTTTTTTTTTCCTGAGACAGGGCTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATTCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAGAGTTCATTTTCTTATTGTGAATAGAAAAGTAGTGAACACAGATGAGCAATGAACATATCTATGGTAGCGTATGGAGTCCTTGGTATGCATATGGTGGTATAGTGGGATCATACAGGAATTCCATTTTTAATTTTTAAGCCACTGATTTCTATAGTGACTTTTGTAGTTTACATTCTCAATAAATAAATGTTTTATAACTTAATTAAAAATATTAAAAATGAAATGCCTGGTGGATAGTGAGATAAGTGGCTGGTTATGACATTGATGTTTTCCTTTGGTGGCATAATTTTATCCTTCATGTTGTTCCATATGCTTGTGTTTTGTAGCATCTCACCAGGTCAGAGCACATAGTCCCTAGTGAAGTGCTCTTACCAAAGCAGGAACCGAATTGCTTGTTCTTACAGAACCTACAAGCAGTGTTGGGTGACTCATGTAAATGTTGCTTTCAGGTTTTCCTTCTGATTTTTTGAGACAGGGTCTCATTCTATAGCCTATCCTGGACTATTCCTTATGTATTCCGGGCTGATCTTGAACATACGGTTATCTTCTTTCCTCAGCTTCTCGAGTGCTGGACTACAGGATTACTGTATACTGTAGGGATAAACTCTTGTGCATGGTATAAAAGTATCACCTGTCAATAAAGAGATGAATAGCCTATATAGCAAGGCAGGATACAGTAGAAGGTGGGGCATCTGACATAGAAGAATTCTGGTACGGAGTTGTGCAGGAGATTCACCACCCAGACTTGGAGGAAGTCAGATGTATGAAACTGAGGAGAGATAACCAGCCACATGGCAGACATAGAATAGTATAAATGGGCTAATTGAGTTATGAGCTAGTTGGGGAACAAGCCTAGCTTAAGGCCTAGGCATTAATTCATAAATAAACAAGCCTCTGTGGCAGTATTTGGGAACTGGGGTGGATATAGAAAGCCTAAATGGTTACTGTGTACTTTTAATTTACTCTTTGCAGTCTCCTCTTTTTCATTTTCACCTTTTGTTTTTCTTTTCCTTTAAG
Seq C2 exon
GTTGCAGTTGTTCTGATGGATACCCAGGGGGCCTTTGACAGCCAGTCAACTGTGAAGGATTGTGCTACCATTTTTGCTCTAAGCACTATGACTAGTTCTGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024759-Atl3:NM_001163505:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.174 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0226314=GBP=FE(17.1=100)
A:
NA
C2:
PF0226314=GBP=FE(12.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: