HsaINT0014192 @ hg19
Intron Retention
Gene
ENSG00000184743 | ATL3
Description
atlastin GTPase 3 [Source:HGNC Symbol;Acc:24526]
Coordinates
chr11:63413979-63419458:-
Coord C1 exon
chr11:63419408-63419458
Coord A exon
chr11:63414036-63419407
Coord C2 exon
chr11:63413979-63414035
Length
5372 bp
Sequences
Splice sites
5' ss Seq
CAGGTATAT
5' ss Score
7.88
3' ss Seq
ATAATGCTTCTTTTTTAAAGCTC
3' ss Score
6.68
Exon sequences
Seq C1 exon
ATTTATAATTTATCTCAGAACATTCAAGAAGATGATCTTCAACAGCTGCAG
Seq A exon
GTATATATTTCTCATAACAATTTTAACATCATATTATTTAAAAGTTTTAAGATTAAGGAACATTTTACAACTGAGTAGTTTTTAGCAAAAGATTGAAATGTAGAGGAAGGTTTTTGGTTCATAGTAATTCTATACTATGTATAGCCATTGGTGGGGTGGAGCAGGAGTGGTCGGGGAAGGCCTTAATGATTTGAGCAGAGAATGAAAGAAAGTGGGCAAGTGAGTCCTTCAGATACATTTGGGCGGAAAACTATTACAGGAGAGGAGCAGCTGCTGGAAGACAGACCCTGAGGGGAGTGTGCTTGGCAAGATCAAGGAATGGCAGGGAGGCCGGTGGGTAGGATTGGAGAGTGTGACAGGAAGGGGTTAAGTGATGAAGTCAGAGAGGCAGTGAGGTCCCACTCATTCTGGGTCTTTTCCTCTGGGGAAGGTGGGAGCCATGGGAGGGTCGTCAGCAATGATGTTATCTGACCTGTTGTAAAGGGATCATTCTGGCTGCTATGTTCAGAATAGACTTTTTTTTTTTTTTTAAGACGAAGTCTTGCTCTTGTCCCCAGGCTGGAGTGCAATGATGCAATCTTGGCTCACTGCAAGCTGGGATTACAGGTGTGCGCCACCATGCCCGGCTACTTTTTGTATTTTTAATAGAGACGGGGTTTCACCATGTCGGTCCGGCTGGTCTCAAATTGTTGACCTCGTGATCCGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCGCCCGGCCTTTTTCTTCTCTTTTTTTATAGCAGCAGGTCTTATCTGTTTTTCCCACAAAATGCTCTTTTGTGAGTATTCCAGGGTTGGATGCAATTCTGGTATGTTACTCTAATGCTACTTCTCCCACTGACATTCAAGAAAGCATCAGAATGTGAGTGAGTAAGGGTGTCATTATTATAGGGATTACCTTGAATTAGTTCTATTTTATGTTTATTTTAAAAAACAAGGAAAATTCCTCCTAAACCTCGATCCTTAATGTTGCTTATGGCAATTGTCTGTACTTCATAATTGGTAGTTCTGTACCAGTGCCATGGCTTAGTGGTTGAGAGCTGTTGCTCTGTAAAACTTCGATCACAACTTGAGTTGGTCACCATTTCACCTGAAATTTATTCCTTTCTAAGCTCCTTCCTTTCAACCATTTTTCGAATGCTTACCTTGTGTGAGGTAGAGGGCCAAGTGCTATAGATATATGTAAGGTCACATTCACAGGTACCAGGTGCGAGGACTTTAGCATATTTTTCTTCAGGACACAATTCAACCCATAAGAAGTAGTAAGTAGATTATGATGCAGTTATGTAATTCACCTTGTCTCACATGACAAGGCTGTTGGTAGACTCAGCAACTGTAAAATATAAATATTACAGAGGAGAAAGTAATATGTTTGTGTGCCTGGAAATCCGTAAGAATGAACTAGAAAATTATTTGGAACTTAAAAAATAATTAAGGTCTCCATTACAAAATACAGATACAAAATCATTAGGTTTTCCTCTCTACTAACAATAACCAGTTTAAAAATGTAATGGAAAAAATTGACTTTAGCAACAAAATATTGAAAACAGAATAAACTTAAAAAAGATCTATATGGAGCACTTCAGAATTGTATGAGGCATATAAAAGATTTAACATGCAGAAATATGCCTTGTTTCTTCCATATGGGGATGATAATAGCCAACGTGTATTTATTGCTTACTCTGTACTAGATACTGCGGTGTGTTATAAACATTATCTCATTTAGAATGAGAATTATAAACTTGTCAGTTCTTCCCCACTAAACAAAATCATAAAGGCATTATTTTGGGAACTTGACAGAATTGTTGTGAAATTCATTTGGAAAGTTAAATTGTAAAACAGCCAAAAAAAAAAATTACAGGGGAAATATGAGATAATTGACTTAGTACATATTATAAATCTGTAATTACAAGAACATGGCATTGTTTCAGGAAAAAATAGATCAATGCAGTGTACTTACGATATACTACATTTTCATATATTTTATTCTACTTAAGAATATATACACATATACCATAAAGCATAGATCAGTCAATAAATGGTGTTAGGACAGTTGGCTATGTATTTAGATAAATTAGAAATTATATTCCTCTTGGGAATGCTGAGGCAGGCTGATCACCTGAGTTTGGGTGTTCGAGACCAGTCTGGCCAACATGGTGAAACCCTGTCTCTACTGAAAGTACAAAAAAAAAAATTAGCTGGGTGCGGTGGCAAATGCCTGTAATCGCAGCTACTCGGGAGGCTGAGGCCTGAGAATCACTTGAACCTGGGAGGCAAAGGTTGAAGTGAGCTGAGAGCACACCACTGCACTCCAGTCTGGGCAACAGAGTGAGACTCTGTCTTTAAAAAAAAAAAAAGAAAATAAAATTATATTTCTACCTTGTACTATATACAAAAATTCCAGATAGACCAGATAGATTAAATATTTTGATGTAAAAAAAGAAATCACAGCTGGGTGTGGTGGGTCATGCGTGTAATCCCAGCACTTTGGGAGGCTGAGGCAGGTGAATCATGAGGTCAGGAGTTCGAGAACAGCCTGGCAAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCTGGGTGTTGATGTTCATGCAGAGCCTTCTGATTAAACACATTAATATTTCTTCAGTGAAATATATAACCAATAAAATGGGGTAAATAAGCCTATAAAAAGCTTCATGTCAGTTGAAGGCAGGTTTTGTTTCCAAATAAGTTTCCCCCCTAACCTGGATTTTTAGTACTTTTTTTATTTTTTTTGAGATGGAGTCTCCCTCAGTTGCCCAGGCTGGAGTGCAGTGGCACGATCTTGGCTCACTCACTGCAATCTCCGCCTCCCAAGTTCAAGTGATTCTGCTGCCTTAGCCTCCTGAGTAGCTGGGACTGCAGGTGCGTGCCACCACACCCGGCTAATTTTTTTTGTACTTTTAGTAGAGACAGGGTTTCACTATGTTGGTCAGAGTGACCTCAAATTCCTAACCTGAAATGATCTGCCTGCCTCAGCCTCCTAAAGTGCCAGGATTACAGATGTGAGCCGCCGTGCCTGGCCTTTTTGTTTTTTTGCTTTTTTTTTTTAGAGACAGAGTCTCACTCTGCTGCCTAGGCTGGAGTGCAGTGGTGCGATCTCGGCTCACTGCAACCTCCACCTCCCGGACTCAAGCAATTCTCCTGCCTCAGCCTCCTGAGAAGCTGGGATTACAGGCATGTGCCACCATGCCCAGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCGCCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAGTGATCTCCCTGCCTTGGCCTCCCAAAGTGCTGGGATTAGAGCGGCCAGCCCTGCTAAGAGGCTTTTCTCAAATGTCTAGCTGGTGGTCCTTGACTACCTATTTAAGAGAGAGCCACTAACAATCCAACTGGGAGCTTTGATAAGAGGATAGGCCTTGTGTACTGGTTTGGATCACAATGAGGTAGGTGGTTTGGCAAGGTTATCTAGCTATTTTGTTGCCAACTCCTAAATGTCTATTTTTTTTGCAGATATTTATTCTTGGGTTGTTAGTTTCCCTGGAAAAAATTTCTTTAAATTCCTGCCTTGGTGGGTAGAAGCTTGCTGTGGCAACCAGTAGGGTGAGAGGGCTAAGGAGTCCCACTGCTCACTATGTGGACTTTGATTTAAGTACCTGTTTGAAGGTAGGAGACTTACTCCTAACCTCAGCTGAGTTTGGTATCTAAGTCTAGATTTTTTTTTGGATTTATCTTCTCCAGATAGTACACTTCCCATCTTCTATGGAGGCAGGAAAAATACGGCAGTTAGAGAGGGGTGCCTGGAAGTGTAGGTACTTTCTCCTAAGACTCACATATTTCCTAGTTGTCAGCTGGACTCCTACACCTCCTCCTGTAAGGTAACTGTATGCTTATAATTTCTGAGCATTTCAGGGATTTCTACTGAGATAATTTGCTTCTTCCTTGTTGGCCCCTGTCTCTTCCAGATTTCTTAGCAGAACAGAGAAAGCCAAAACTTGAGACAGTTCTCATTTGTCTATTTTCCATCCAGAATGTTTTTGACAGGGCTTTTCTGCTGGCTGCTTTGTCCTGTTTATTTATTTACTTTTAAAGTTTGTTTTGTTATGCTTTTAGTGAGGCTTCCTGAAGATTTAGAGGTAAATATACATGTAAACCTTAACCTTAAAGAATTCAGTCATTTGAATGACATAAATATTATGGGCCTAATACTTTTCTTGCTGCTGGAAATCCAGTAGTGCACAAAACAGACAAATATTCCTGCCCTCATGGAGTTTAAATGCTAGTATAAAGACAGATGCAAATCAAATCAAGAAGAGGTATAGTATATTAGATAATGATAAATGTTAAGAAAAAAACTTTTAAGACTGGGTGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGAAGGCCGAGGCAGGTGGATCACCTGAGGTCAGGAGTTCAAGACCAGCCTGACCAACATGGAGAAACCCCGTCTCTACTAAAAATACAAAATTAGCCAGGTGTGGTGGCACATGCCTGTAATCCCAGCTACCTGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCGGGAGGCGGAGGTTGCGATGAGCCACGCGCCATTACGCTCCAGCCTGGGCAACAAGAGCACAACTCTGTCTCAAAAAAAAAAATTTTTTTTTAAAGACACGAAGTAGGAAATATTATTGGCAAACTTGTAATCTTTTTCGGTAGATGGCCATGGAAGTCTTCACTGAGAAGGAGCTATTTGAAAGACCTTAAGAAGTGAGGGAGCAGATCATGAGGAAATTTGGGAGAAGAACTTATAGTTAGTGGGAGGAGCCAGTACGAAGGTCCTAAGGCAGCGGTGTGCCCCGTGTATTTGAAGAACAGGAAGGAGGGCCAGTGTGGCTGCATCACACTGTAAGGACTGGCTTTAATACTGAATGAGGTTGTGGGGTTTTGAGCAAAGCCATTATATGATCTAACTAACCATATTATAAAAGAGTCAATGTGGCTGCTGTGTTGAGAATAGCCCATAGGGAGGCATGGGCTGAGGCAGTTAGGAGGCTATTGCAGTATTCCAAGCCACATGGAAATAGTGAGTGGCTGGATTCTGGATTTGTTGATGAATTGGGATGTGGGATGTGAGCAGGGAATAACCAAGATGATTTTAAGGTTCATGACTCCTGTGGGCTTTTGAAACTGTAGAAGTCTGGTATCAGTATAAATATAATGAATACTTTGCTAAAAAGGCCATAGAACTATTTTAAGTAATTTTGCTTTACAAACCATAATGCTTCTTTTTTAAAG
Seq C2 exon
CTCTTCACAGAATACGGTCGTCTGGCAATGGATGAAATTTTCCAAAAGCCTTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184743-ATL3:NM_015459:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0226314=GBP=FE(5.9=100)
A:
NA
C2:
PF0226314=GBP=FE(6.7=100)
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)