RnoINT0022662 @ rn6
Intron Retention
Gene
ENSRNOG00000021203 | Atl3
Description
atlastin GTPase 3 [Source:RGD Symbol;Acc:1309871]
Coordinates
chr1:222771666-222773342:+
Coord C1 exon
chr1:222771666-222771716
Coord A exon
chr1:222771717-222773285
Coord C2 exon
chr1:222773286-222773342
Length
1569 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
TTAACTTCTCTTTTTTAAAGCTC
3' ss Score
8.98
Exon sequences
Seq C1 exon
ATTTACAATTTGTCCCAGAATATTCAGGAAGATGATCTTCAGCAGCTACAG
Seq A exon
GTAACATGAAATGGTACTGGGAATAGTGAGTAAATGATAAAATATCATGTATTTTCTAGCCTATGTGGAATCTAGACACGAAGGGGGTGTGTCTGAGTACAGGAAGAAGACAGAGAATAGGAGGGATAGGATGAAAAGGCTGTGGCTGGGTGGGGCTAGGAAGAGAGGCTTGGTCATTGAAGTGCCTGGTAGGCAAGCATGGAGACCTGAGTTTGAGTCCCCAGAGCTCATGTAAAGTGAACAACCAGGTGTAGTGGTGCGTGCCTTTTATCACAGCACTCAAGAGGTAGAGGCAGATGGATCTTTGTACGTTTGAGGCCAGGCTGGTCTACCTAGTGAGTTTCAGTGTGGTAGTCTGCTAACCCCAATGATGGAGAGGTAGAAATAGGTTATCTGGAGCTTAATGGCTAGTAGTCTAGGAAACTGGTTAGCTTAGGTTTAGTGAGACACTGTCTCATAAACAAAGGTTGAAAAGTATAGAAGAAAAAAAAAGAAAAGTATAGAAGAAACCTGACATAACCTCTGGTCTCACATAGACATGTGTATATATACACCAACATGTGCATTTACATGTACATACGACATACACATTACACAAACAACAGCAACACAGCACAGATATACACATAAAAAAAGAAATAAAAGCAAACAGCTGGAGGTGGACAGGGTCTCTGTGAGTCCTGAGCCAGCCAAGGTTTTGGGGATTGGATTTGGGTTGGGTTCTCGGGCTTTTACCTACTGAATGGTTTGCTTGGTCTTTTCGTTTTGATTAAGACTGCACACACACTACTCTTGCATTCATTTCTTTGGTAGAGGGGAGAGACCTGGGGCGATTTCCAAACATTGCTTCAATTGGTAGTCCCACTTCCTCACCCCTCTTTGGAGGAACTCAGGTTTTCATTTCTCAGTTGTTTAAGGATTCTGTTGAGAGAATATTTTACTTCTTGGATCTCTGTTTCCTCCCATTTGTTAACAGGGCAGAAAAAGCCAGAACTGGACACTTGCCATCTATTTCTTTTCTTCTGTGGTATTTTTGACAAGTTATTTGTACTGCCATATTATTTCATGTCCCCCTTATCCTATGAATTTGATAATTAAACTTTATTTTATTACACTTAGTGTGGCTTCATGAAGAAGCAGGCAGTATGTGTGGGAGTCCTAATCTTAGTGAAGGTGCTCAGTCGTTTGAATTGGGTAGCTACTTACATAGTGCCAGGACTTTTGCTGTGGGAGATAACACAAATGGAAATGTCCCTGCATACTGGTCTGAGTGCTCATAGTGACTAAAAATGCTCATGGCGATTAAAGGTAACTAGGCCCAGCCAAATGAATATTTACTTTTTTTAGATTTATTTTTTTGTGCATGAATATTTCTTCCGAATGTATAAATATGCCTGGTGTTGGATGGAATTTGTGAACCTCCATGTGGGTGCTAGGAATTGAACCCTGGTCCTTTGGAAGAACATGCTGTTAACCATCTTGCTAGATCCCAAATATTTTGCAAAAGAATACCTTAAAATTATTTTAAATAAAGTTGTCCTACAAGTCATTAACTTCTCTTTTTTAAAG
Seq C2 exon
CTCTTCACAGAATATGGCCGTCTGGCAATGGATGAAATTTTCCAGAAACCTTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021203:ENSRNOT00000028787:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0226314=GBP=FE(5.8=100)
A:
NA
C2:
PF0226314=GBP=FE(6.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]