GgaINT0082221 @ galGal4
Intron Retention
Gene
ENSGALG00000008515 | ATL2
Description
atlastin GTPase 2 [Source:HGNC Symbol;Acc:HGNC:24047]
Coordinates
chr3:15782619-15784878:-
Coord C1 exon
chr3:15784828-15784878
Coord A exon
chr3:15782676-15784827
Coord C2 exon
chr3:15782619-15782675
Length
2152 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TCTTACACTCTTTCTATCAGTTG
3' ss Score
7.53
Exon sequences
Seq C1 exon
GTATACAACTTGTCCCAGAATATTCAGGAAGATGACCTTCAACATTTGCAG
Seq A exon
GTGAGAATATACAGAACTTATATTAAGCTACTTCTGAGCCAACAATCTTGAAATTGTTCTTGAATTTACTACCAATGGAACTGTGATTTGGTAGCTGCTTTGTACTTAGTGCGAACACTGAGTCTGACCTGATGCTAAAACTAGTGCTGCCTATAAAAACATTATTTGCATCAACGCCACGATGTTGTGATGTTTTTTCTTTGACAGCATAGAAGTAATATAGCTTAGACTTCTCATTTGGTAAAGTCTTCCTAAAGTCTGTTCTCTGTATAGGAAGTGGTAAAATTCCTGGAAGGATTAGAATAGGAAATAATTCCTGAAAGCACTTAGTGGGAAGCTTCCAATATTTCTTTTTTCACTAAAATTAGAAAATTGACAGCGTTTCATAACTGGTTTCTACTGAAATTTGGGAACATGACTCAGAGAAGGAAGAGTATCTGCTGCCCAGAAACCTTTAGTTTTTCAGCTGAGAAACTTCTAGAGAGTCCTATTCTATTTAGAAACAAAATCATAAGAGTTGTCCACTTCCTACTGTGAGATTTTCATCCTCTAATGGAATGTTGTAGTCAAATGTCACTGAATTTTGGCTTCATGTGAATGGTACAAGAGCCTTAACTCCTTAACTTAAAACCTGTAGCTTCAAAAGCTAGTTTTGTATCAACTAATCTCTGCCTGTGCTGAGGCCGTGACCTTGTTTTTAAAAATATAAAAAATATATATATAAAAAAAAAATCATATAAAAAAAATATATAGTCTGATTGAAAGGACTTCTGTCTTGTTCAGTGCTGCGGAAGACTGGCTGCCAGTGCTGGGAGTAGAAGTGAACTGACTAAACAGTCTTCTAATTCTGTCCTCAGTTAAGAGTGGTATGCCAGAGAGAGGAAAGAAAAACAATAAAAAAAAAAAAACCTCTAGAGCCCACAAAACAAACCCTATAAAAAACACATTTCCAAACAAACAAAAAGCATCAGGAAAGCCTGGCTTTGAAATAATTTACTAATAACTCTGGTCCTTTGACAACCTCAGTGTAGTCAGAATAGATAAATCTCTGTTACAGTGAATAGTGAGATTTGAGGGAAGTGCAATAAAAAAGAAGCAAATGCACAGACATTCCCTACCCACTAAAGATGAGGACAAGGAATCATGGGCTGAGGGAAGGAAATGTGCTAATCTGCAGTACTCTTACTCTGTCATTTTCATGAAGCAGGGAGGTGAGTGCAGTGGGCAGTTGAGATCACAGAAATGAGCCATTCCCGTGTGGATCCTTGGCCTCTTCAGAGCTTTGTGCTCAGAATGACAGGAACTTGAAAGTTCACCTGTATTATGTTTGTCTTGTAAGTTCTCAGATGTTCTTCTGACAAACAACAGGAAAATTGTCCACATAGGATTTTTTTTTTTCCTGAGGCATCGGAGAGATTAGCTTTAATGCAGAGGAACAGTTGCTTGATGATAGAGGGTAATGTCATGCTTCCTTCATCTTACTCTCACAGAAAAAAGGGCTAGTAAAAAGCCACATCTGAGCGTTAAGCTCTGCTGAAACAGCCAGCATGTGACTTGTGCCGTAAAACATGAGAACACACTTAATGTGGAGTGGAAGAATGCTGCTTTTAGCATTAAAGATGCTGAAAGTGACCATAGCAATACAGTTGAGTTAGTGCTTTATGCTGAAGAGTAAGAACAATTACGAGTCAAGATCACAGGCTGAAGCAGAGATCTGGGAATCTGCTGAACTTGACTTGTATTTGAATGTCTACTACGTTGGGTCTAGGCAAGTTCCTTGAAATTCTGAGGAATAAATCTTTTGCGTAAGTAAGGGACGAGTGTTAGGCAGGCTTACCTCCTTAGGCTCGCTGACAAGTGTTGGAAACTGGCTGGAGTCCTGGTCAGCTTTCCTCTGAGAACAGCCTGCAGGCTTCCCACTTTGAGCTGCAGTGTGGTGATAGTTCTGGTGTAGCACTGTGAAACCAGTGGAAATTGTCTCCTTCCTGAGTTTTATAGAAGGTTGGTGTGCTTGTTCTTGAGCTGTATTGGCCATTTTAAAGCCATAAGATTTAAGATTGAATGTTTTATTTACTAGTGACATAATGTGGCATAATGCATTGTTACAGTAGAAAATTCTTTCTGTGTGGTACTCTTACACTCTTTCTATCAG
Seq C2 exon
TTGTTTACAGAATATGGAAGACTAGCTATGGAAGAAATTTACCAAAAGCCGTTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008515:ENSGALT00000013868:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0226314=GBP=FE(5.9=100)
A:
NA
C2:
PF0226314=GBP=FE(6.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]