HsaINT0014179 @ hg19
Intron Retention
Gene
ENSG00000119787 | ATL2
Description
atlastin GTPase 2 [Source:HGNC Symbol;Acc:24047]
Coordinates
chr2:38541750-38542476:-
Coord C1 exon
chr2:38542426-38542476
Coord A exon
chr2:38541807-38542425
Coord C2 exon
chr2:38541750-38541806
Length
619 bp
Sequences
Splice sites
5' ss Seq
CAAGTACGT
5' ss Score
8.4
3' ss Seq
TAACTAACTCTATTTAATAGTTA
3' ss Score
3.71
Exon sequences
Seq C1 exon
GTATATAATCTGTCTCAGAATATTCAAGAAGATGATCTTCAACATTTGCAA
Seq A exon
GTACGTATTTCTTTTTTTAATTTTTATTTTTTGAGATGGAGTTTCGCTCTTGTTCCCCAGACTAGAGTACGGTGGCACAATCTTGGTTCACTGCAACCTCCCCCTCCCAAGTTCAAGGGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGCATTACAGGCATGTGCCACCATGCCTGGCTAATTTTGTATTTTTAGTGGAGATGAAGTTTCACCATGTTGGTCAGGCTGGTCTTGAACTTCTAACCTTGGGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACCCGGCGTGAGCCGCTGCGCCCGTCTGCGAGCACATATTTCTTAAAGAAAATGTGCCAACTATTGAAATTTAATTCTCACTTTATTATGAATTTACACTTGGAAGCCTATAATACTGGTAACACGATTGAATGTTATATGGGTTTAAACTGGTGTATGACTTCTTAACTGGAAGAAATTTTGTACATACCTAGTGTGTTAGAAAATTAAATGTTTGGCTTTGAAATGATTTTAAAGGTTCTGGTACCTGGAGCTTTGGTGTGGAACAGGTTTACACATGTCTTCTTTCAATCTCTTTAGAGGCATTATTTTAACTAACTCTATTTAATAG
Seq C2 exon
TTATTTACAGAGTATGGAAGACTTGCGATGGAAGAAATCTACCAGAAACCATTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119787-ATL2:NR_024191:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0226314=GBP=PD(0.1=0.0),PF0226314=GBP=FE(11.9=100)
A:
NA
C2:
PF0226314=GBP=FE(10.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)