DreINT0034736 @ danRer10
Intron Retention
Gene
ENSDARG00000057719 | atl2
Description
atlastin GTPase 2 [Source:ZFIN;Acc:ZDB-GENE-030131-6505]
Coordinates
chr13:7961662-7961856:-
Coord C1 exon
chr13:7961806-7961856
Coord A exon
chr13:7961719-7961805
Coord C2 exon
chr13:7961662-7961718
Length
87 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGCA
5' ss Score
6.37
3' ss Seq
ACATCATCTGTCTTTTATAGCTT
3' ss Score
9.99
Exon sequences
Seq C1 exon
GTTTATAATCTTTCTCAGAATATCCAAGAAGATGATTTGCAGCATCTCCAG
Seq A exon
GTAGCAACTTTATTAGTGTACATTGTTAGTTAGTAGTGTGTTAGTATTGTGTGTATATGGGACTGTAACATCATCTGTCTTTTATAG
Seq C2 exon
CTTTTCACAGAATATGGTCGACTTGCAATGGAGGAGATCTACGAGAAGCCATTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057719:ENSDART00000080460:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0226314=GBP=FE(5.9=100)
A:
NA
C2:
PF0226314=GBP=FE(6.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCAAGAAGATGATTTGCAGCA
R:
CTGAAATGGCTTCTCGTAGATCTCC
Band lengths:
87-174
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]