BtaINT0022829 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016167 | ATL2
Description
atlastin GTPase 2 [Source:HGNC Symbol;Acc:HGNC:24047]
Coordinates
chr11:20702131-20702536:-
Coord C1 exon
chr11:20702486-20702536
Coord A exon
chr11:20702188-20702485
Coord C2 exon
chr11:20702131-20702187
Length
298 bp
Sequences
Splice sites
5' ss Seq
CAAGTATGT
5' ss Score
7.44
3' ss Seq
TAAATAATTTGATTTAATAGTTA
3' ss Score
4.02
Exon sequences
Seq C1 exon
GTATATAATTTGTCTCAAAATATTCAGGAAGATGATCTTCAACACTTACAA
Seq A exon
GTATGTATGTCTCAAAGAATGTATGCCAAAGTATTGAAAATTTAATTCCTACATTATTGTTACTTTACACCAAGAATCTATAATATTGTAAGAAGATTGACTATTATATGATTTTAAACAGATACATGATTTCTTAACTAAAAGAAATTTTGATGTATACTTGGTCTTAAAAATTAAATGCTTGGCTTTCAAATGATTTTAAAGGCCCTGACATCTAGTGCTCTGATATAGAACAGCTTTACAGATGTCTTCTTTCAACGTCTTTGGGGGCATTATTTTAAATAATTTGATTTAATAG
Seq C2 exon
TTATTTACAGAATACGGCAGACTTGCAATGGAAGAAATCTACCAGAAACCATTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016167:ENSBTAT00000061283:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0226314=GBP=FE(5.9=100)
A:
NA
C2:
PF0226314=GBP=FE(6.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development