RnoINT0022650 @ rn6
Intron Retention
Gene
ENSRNOG00000006523 | Atl2
Description
atlastin GTPase 2 [Source:RGD Symbol;Acc:1305125]
Coordinates
chr6:2597617-2597994:+
Coord C1 exon
chr6:2597617-2597667
Coord A exon
chr6:2597668-2597937
Coord C2 exon
chr6:2597938-2597994
Length
270 bp
Sequences
Splice sites
5' ss Seq
CAAGTATGT
5' ss Score
7.44
3' ss Seq
TTAACTCACTTGGTCTGTAGTTA
3' ss Score
4.56
Exon sequences
Seq C1 exon
GTATATAATTTGTCTCAGAATATTCAAGAAGATGATCTTCAACACTTACAA
Seq A exon
GTATGTCTTAGAGAATATATACCAAAGTATTAAAAATTAACTCTTTTTTATTGTAAATTCATGTTTAGAAGCCTGTAATACATTTGAATTTTGTATGGCTTTAAAATTGTTGGTTGGTTACCTAGACGACATTTCTGATATACCTAGTTATTAGCCAGTGAAATGCCCGACATTCAGATTAGAGACTGACATCTACTCTGATGCAGACAGTTTTATAAATAACTTGTATCAGTCCCTTGGTGGTGTTGTCTTAACTCACTTGGTCTGTAG
Seq C2 exon
TTATTTACAGAGTATGGGAGACTTGCAATGGAAGAGATCTACCAGAAGCCATTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006523:ENSRNOT00000008988:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0226314=GBP=FE(5.9=100)
A:
NA
C2:
PF0226314=GBP=FE(6.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]