HsaINT0015073 @ hg19
Intron Retention
Gene
ENSG00000033627 | ATP6V0A1
Description
ATPase, H+ transporting, lysosomal V0 subunit a1 [Source:HGNC Symbol;Acc:865]
Coordinates
chr17:40659538-40660607:+
Coord C1 exon
chr17:40659538-40659645
Coord A exon
chr17:40659646-40660589
Coord C2 exon
chr17:40660590-40660607
Length
944 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
TGTAAATTTGTGTTTTCAAGCCT
3' ss Score
5.01
Exon sequences
Seq C1 exon
GGAACTCTCAACTTTGGTGGGATCAGGGTGGGCAACGGACCGACAGAGGAGGATGCTGAGATTATTCAGCATGACCAGCTCTCCACCCACTCAGAGGACGCAGACGAG
Seq A exon
GTAAGATCCCGTGGTGTGGGCTTTCTCTCCTTCCACCTCGGGTCAGCCCTAGTCTTGTGTACCTAAGAGGCCTCACTCCAGTCTTCTCCTTGAAAAATAAAAATACTAATTAATATTCAGCCTGCCTTCTGGACCTCTTAGGGCACCACAGCTTTTTCCAGTGGGCCCTGCCCTAAGCTCCAGCTGTTGCCCCCAGAGCCCGCAGCAGTTTTGCTCCTATCTTGAATTCCAGATTTTGCCCGCAGTGCTCTGCACGCAGGTCTCCATTACTGACTGCTCTCTCACCTGAGGCAGAGCAGGCCTCAGCATCCCAGCTCTTATGACCTGAAACACAGGTCACTAAGCACAGCTTCTTCATCCATTGACCCTTCCAAGGATCGTTCCAATTACATTACTGACCAGCTATAATCACTGGTACTTTTGAAGTCCTACACCACTGATGTGTTCTTGCTGCAGATATTTTGTTTGAGCTTTTTTGGTGTCATTTGCCTACTTTTTACAGGGAGAGAGAGAATTAGGCCAAACTAGACTTTTCCTTAAGATACCACCTCCAAGCCCACTCTCCTTGCCTGACCCCTTGTAGCACAAAGCCTCTGAACTGAACTATTAAATCTCATCTACTCATTATGTTCTTTTTAAAGCAAATAAAATAGGAGTTGAGGACTCAAGTTGGACTTTTCAGTCTGTCTGACCACTTTCACTATATATGATTTTTTAAAAAAGAAATCACAAGGGTTGTGGATGCCTTTAAAAAATATGTATCTTAATGCTCTAAATTCCTGCTGATTTCGCTTTGTGTATATGCTGAGGAGGCCTGCCTCCAACGTGCTAGCCCATTTAACATGAACAGTCCTCCCCAAGAAGCATTCAGTAGCCTTGTGCTCCTAACTTGTGACCTTGTGTGTGGCGTGGCTCCCCACTAAGTGTAAATTTGTGTTTTCAAG
Seq C2 exon
CCTTCCGAGGACGAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000033627-ATP6V0A1:NM_001130021:18
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.039 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(19.6=100)
A:
NA
C2:
PF0149614=V_ATPase_I=FE(0.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)