HsaINT0015095 @ hg19
Intron Retention
Gene
ENSG00000105929 | ATP6V0A4
Description
ATPase, H+ transporting, lysosomal V0 subunit a4 [Source:HGNC Symbol;Acc:866]
Coordinates
chr7:138433912-138437582:-
Coord C1 exon
chr7:138437370-138437582
Coord A exon
chr7:138434063-138437369
Coord C2 exon
chr7:138433912-138434062
Length
3307 bp
Sequences
Splice sites
5' ss Seq
ATGGTGCGT
5' ss Score
8.27
3' ss Seq
GCTTTTTTTTTTTTTTCCAGGAA
3' ss Score
11.68
Exon sequences
Seq C1 exon
GTCATAACACAAACAGAGTCTCACCGCCAGCGCCTGCTGCAGGAAGCCGCTGCCAACTGGCACTCCTGGCTCATCAAGGTGCAGAAGATGAAAGCTGTCTACCACATCCTGAACATGTGCAACATCGACGTCACCCAGCAGTGTGTCATCGCCGAGATCTGGTTCCCGGTGGCAGATGCCACACGTATCAAGAGGGCACTGGAGCAAGGCATG
Seq A exon
GTGCGTGGCAGGTGGAGCCAGGAGGGGTCCGATGAGTCAGCCCCTCTGCTGGGCTCTCAGAGGGTGTTGGCCTCATGGGCCACATGAACTCAAGTGACTTGGTGGTAGGATTGCTTCCTTCATCTTTGTGTCTTCAGTTATCAACCCCACTCGAGGACATAAAAGAAATTCCTTTGTCTTTTCAGTGTTTGACAGTTGTTCACCATTTTTTGACCTTTTGTGAGTACGTATTGAGGTTTTTTTAAAAAAAAAAAAAAAATAGAATCTCGCTCTGTAGCCCAGGCTGTTGTGCAGTGGCACAGTCTCGGCTCACTGCAACCTCTGCCTCCCGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGTGCGCCCTACCACGTCCAGCAAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCTGGGCTGCTCTTAAACTCCTGACCTCAGGTGATTCGCCTGCCTCAACCTCCCAAAGTGCTGACATTACAGGTGTGAGACATCACACCCGGCCATACTGAGCATTAATGTGCCAGTCTCTCAGCTAGACTATCGTTTTGGGGGGATTTTGTCTTTTTTTTCTTATTAAAGATGGGGACCTCGCTATGACACCCAGGCTGGAGTGCAGGGCTGTTCACAGGCATGGGCATACTGCCCTACAGCCTCAAACTCCTGGGCTCAGGTGATCCTCCCATCTCAGCCTCCCAAGTGGCTAGGACTACAGGCACGCGCCACCATGCCCAGCTCCACTCTGCTAGACTGTAGATACCACCTGTTACCTCATGGAGGTTATAGTCTAGCTAGAAAGATGAATAACCAAGCATCTATAATAAGAGCCAAAATATGTAGATCGCTTGCGGTGTGTCCGAGATGGCTAAGCACTCTGTCCTCGTTGAGTTCTCACCGCTCCCTCCATTCATTCCTTAGACATTCCCTGTGTACTAGGAACGGATCTAGGGCTTACACACTGGCAGGCCAAGACCCTGCTTTGATAGACATTCTAGAAAGGGACACGGAGGCATGTCCGTGACTAATGAGATTTCAGGCAGTGATGAGTGGTGGGCAGGAAACCAAGCAGGGGACGGCGAGGGGCAGGATGGAGAGTGGGGGCTTGTTCTGATCACCGTTATTCACCCCATTGAAGGAGGGACCCCCTCCTGCCCTAAATAGTACAAGATGGCCGAACACATTACCCTGACACTGGACAGACGGGCTTGACAGCTGTTTTTAGTCACTCGTCTTCAGAGCCCAGGGGAGAAGGACACCGCACGCCATGCGGGCCACACAGGGCTTGCCCTCGGGAACTGCGTTTGGGAGCAGAGTGAAGCAGCAGGGCCGGTGGGAGGCAGGCTCTGCAGTGAACGAGGGTGAGGTGACCTTTGGTTCTTGCAGAAGGATGTGATTAGCTTGTTTGAATAATTTCACGGGGTGGGAGGAGTGAAGCCATTAGGTTGAGGAGTGGGTGGCATGCAGCTGGTTTGGCCGATGGGGAACTAGCTGGGTGGCATATCTGGTGACGGCAGATCTCGTGTTATCTGAAGAAACCCTCTCTGAGCAGGCGGCATTGATAGCATGGGAAGGTTGGGGGCGGGAGGAAGGGTTTTTCAGGCGGAGGAATCTGAAGGTAAAGGCCTTGCAGTAGGAATGGGTTAGAAGGTGGGAGCTTTCTTTATCCCCTTCGTACAGATAAAGAAATGGAGGCACAGAAAGTAGAAGTAACCTGACTACAGTCCTATAGCCAGGAGGCAGGGTTTGAATACAGAAACTGTTCCTCAAAACAGTCGATGCCCCCACATCATGGTCCAAAAACCACCTAAATGGGGCACTTAAAAAGCATTTCAACCAGGCTGAGCAGGGCGGGGGTGCGTCCTGGAGGAAGTGATGCATGCGCAGAGCGCTGGGAGGCTGGCCGGGGAGCAGGTGAAGGGAGGTGCGGCCTCCTGAAAGCAGAGGAGGATTGAAGCTGGGACCGTGAGCACTCGTCCAGCTGGTGTCAGATCCCAGTGGGTGTGCATGTGGCACGTGCTGTCGGGTGTGCGGTGGCTGTACGGTTCCTGGACAGGGAGCACTTGGAATTGTTAAGACTCGAGTAGGTAGAATGGATGCAGTGGCTCACGCCTGTAATACCAGCACTTTGGGAGGCTGAGGTGGGAGGATCATTTGAGCCTAGGAGTTCAAGACCAGCCTGTGTAACATAGCACTGTATGGCTGTAGTCCCAGCTACTCAGGAGGCTGTGGCGGGAGGATCACTTGAGCCCAGAAGTTTGAGGCTGTAGTGAGCTATGATCATGTTACTGCACTCCAGCCTGGGACTTCCTGTCTCAGGAAGAAAAAAAAAGAAAAAGAAAAAAGACTTGAGCAAGTGGAGAAGAGAGGTGGCTAGTGTAGACATGGCCAGTTTCCATGGGGAAGCGTGGGGAAGGGTGAAGGTGTGAATGGAGGATTAAGGCATATTGTTAAGTAGTCTTGATCACAAGACTAAAGAGTTTTGATTTCATTCTTTAGGCGATAGGCAGCCTTTGAAGATTTTAAAGCAGGAGAGTAACATGAGTAAAATAGTGCTTTTTGTTTGTTTTATTAAAAGAGTGCTTGAGCAATCTAGGTGTTAGATAAACGGAGAGGGGAGAGGCTGGCAGAGATGCTGAGGCTTGGAGCTAGGGTGATAGCTGTGGGAATCGGAGGAAAGATTCCGAAAGGAGAACTAGCAAGCTTTGCTGGGTGATCGACTGACTGAAACCAGAGAAGGACAAATCCATGATTCCAAGATTCTAGGAATCTGGGAGAATGGAGGCTCTGCTGAAGGGGCAGGGAGTTTGTGGAGGGGACCTGGCTTTGTGGAGAGTTGATGAATTCAGGATTAGACTCCTGGATTTTGTGGGGTTGGTGACACATTGGAGTTTGAAAGTCTAAGCAGGCAATTAGGAAAAAATTGGGGAAGGGCCAGAGCCATTTGGAAGAGGGGGATGAATTGAGAAAGTGGAGAGGAGGAAAGCATAGAGGGCCAGGAGTCATAACATTCGCATTTACAGCAGTAGGAGACGGGAGATTGTCAGAGACTCCAGAGGGACTCAATTCTCTTGACAGCCCTCCCATGAGATGAATTGGATAAGTATTGGGAAGGTATTAACTCTCTACACATAAGGTCGTGAGTCTCAGAGAGATCAAGAGATTGCCCCAAGTTCGCTCAGTGAGGGACGGCAGGAGCTGGGACTGTGACCTTTGTGCTGACACCCAGCCCAAGACTCTTCTCCTTACATCTTTGTCGCTTTTTTTTTTTTTTCCAG
Seq C2 exon
GAACTAAGTGGCTCCTCCATGGCCCCCATCATGACCACAGTGCAATCTAAAACAGCCCCTCCCACATTTAACAGGACCAATAAATTCACAGCTGGCTTCCAGAATATTGTTGATGCCTATGGTGTCGGCAGCTACCGGGAGATAAACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105929-ATP6V0A4:NM_130840:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(8.7=100)
A:
NA
C2:
PF0149614=V_ATPase_I=FE(6.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)