GgaINT0143134 @ galGal4
Intron Retention
Gene
ENSGALG00000003256 | ATP6V0A1
Description
V-type proton ATPase 116 kDa subunit a isoform 1 [Source:RefSeq peptide;Acc:NP_990055]
Coordinates
chr27:4940624-4941647:+
Coord C1 exon
chr27:4940624-4940836
Coord A exon
chr27:4940837-4941496
Coord C2 exon
chr27:4941497-4941647
Length
660 bp
Sequences
Splice sites
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
3' ss Seq
TTACTTTTTTTCCCAAACAGGAG
3' ss Score
10.86
Exon sequences
Seq C1 exon
GTGCTGAACCAAACAGAGGATCACCGCCAAAGAGTTCTGCAGGCAGCTGCTAAAAATATTCGGGTCTGGTTCATCAAAGTGCGCAAGATGAAGGCCATCTACCATACCCTGAATCTGTGCAATATTGACGTGACACAGAAGTGCTTGATTGCTGAAGTCTGGTGTCCCGTAGCTGACCTCGATTCTATCCAGTTTGCTCTCAGGAGAGGCACT
Seq A exon
GTGAGTAACTGCTGCACTGCTCCTGTCCGCTTCTGTTCAAGCAGACTAGCAGCTGTCAGCAAATGCAACAGGAATTAATTGATTTTTCTGGAAACTTGAGGCTGTTTCAATCAGCCCTCACAGAGGACAGTTTATCTAACATGCAGGAGTCGTGGCTTATAGGTATGCTGCTGTGCACCTTCCTTAGTTACAAATATGTTGTGTAAGCCTTCAAGTTCAGGGAGGCTCCGTGATAAAGTATTTTCCTGTATTGGAGTCATTTGGTGCATTTGGTTAACCTGGCTGTGCTTTGTATTCCTGCTGTTTTTGTATGCAGTGGAACTTAAAGGAATGAGCCAGAACTTTAGCAAGCTCACTCCCTCTGCTCAGATAAACAATGAAGAGTTAGGCGCCTTCAAAATCTTTTCATTTGATCTTGAGAAAAAACATATATATCCATACTAGAAGTATTTCTCCTGTTATGTGATGGGGGAGAGCAGAGGAAATTTGGCAACCTTCTCCAATGGCTCAAGTATATTTTTTATCAGGCAAGCAGTCTACAAAAATGAAAGCCTGTACTTCTCCAAATGCCAGCAAGAATAAATGTTTTGCTCTGCCTTCCATTGCCCCAAGGATGTTTTCTAATCCTGATCTGTTTTTTTTACTTTTTTTCCCAAACAG
Seq C2 exon
GAGCACAGTGGTTCCACTGTCCCATCTATTTTAAATCGGATGCAAACCAATCAGACCCCACCAACATACAACAAAACTAACAAGTTCACTTGTGGCTTTCAGAACATTGTTGATGCTTACGGCATTGGAACTTATCGGGAAATAAATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003256:ENSGALT00000005154:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.176
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(10.1=100)
A:
NA
C2:
PF0149614=V_ATPase_I=FE(6.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCAAACAGAGGATCACCGC
R:
CCCGATAAGTTCCAATGCCGT
Band lengths:
346-1006
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]