MmuINT0021474 @ mm10
Intron Retention
Gene
ENSMUSG00000019302 | Atp6v0a1
Description
ATPase, H+ transporting, lysosomal V0 subunit A1 [Source:MGI Symbol;Acc:MGI:103286]
Coordinates
chr11:101033901-101036872:+
Coord C1 exon
chr11:101033901-101034113
Coord A exon
chr11:101034114-101036721
Coord C2 exon
chr11:101036722-101036872
Length
2608 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
3' ss Seq
TGTTGCTAATGTTCCCCCAGGAA
3' ss Score
9.51
Exon sequences
Seq C1 exon
GTTCTGAATCAGACGGAGGACCACCGCCAGAGGGTTCTGCAGGCAGCTGCTAAGAACATCCGCGTCTGGTTCATCAAGGTGCGGAAGATGAAGGCTATCTACCATACCCTGAACCTGTGCAATATAGACGTGACCCAGAAGTGCCTGATCGCAGAAGTCTGGTGCCCTGTCACTGACCTGGACTCCATCCAGTTTGCACTACGAAGAGGCACG
Seq A exon
GTGAGTCTCCAGCTAGCAGAGAACCCAGCGAGCCTCCTACCTCTCAATTTCATTTTTATGACAGTTTCGCCTTGAGAGTCCTTTAATGTCGTCTTCTACCCTGAGAGTATGCAGGACTGGTCTTTTCCAGAGCGGAAACTGCAGCTCAATGCTGTGAAGGGATTTGGTCATGGCTGTGATTCCTCAGGACAGACCGTCCTGGAACATTAGCTTCCTGGCTCGCTCTCTCTGTTGACTGCTCCTTCTTGGTAGTTACAGCAGCCTGCTTTCTAAGACACTGACCTCAGTAAGCCAGGGAGGGTGTGTACATGCACATGTATGTATATATGCACATATATATGTGTGTAGGGCAAGGTTCTTGCCCTTCCTACGGCTGCAGCCCTTTAATACAGTTTCTCACGTTGTCATGATCCTCAATCATAAAACTATTTTCATTGCTACTTCATAACTGTAATTTTGCTACTGTATTGAGTGGTAATATAAATATCCAATATGCAGGATATCTGATATAAGACCCCTGGAAAAGGGTGGTTCAAAGCCCAAAAGAAGTCTTGACCCACAGGTTGTAGAGGGAGGGTGGACTTGTTTCTAACTTACGTGACTAGAAAAGGCATCAGGAAAAGGTGGAGTTTGATATAACAAGGGGTGTAGCTCAACAGCAGAGCATTGGGTTGGCATGTGTGAGGCCCTGGGCTTGGTCCCCAGAGCTGAAAACAAATGAGTAAACATCGAAAGGGTGACGTGTGATCACGAGCCGGATGGCACAGTGGGGACATACTCAGGAAACCGTATGGACAGGGCAGGGGAGGCAGCTGAGCTGGGAGATTGTGTGTCTTACAAGTACAAAGCCCTGGTATTTTTGTTTGTATGTTTTGCTCTTCAAGACAGGGTTTCCCAGTGTAGCCTCTGCTGTCTTGGCACTCATCCTGTAGACAAAGCTGGCCTTGAACTCAGAGCTCCACCCACCTCTGCCTCCTGAACACTGCCAGTCCTTGCTAGCTGAAGCCCTAGTTTAGTCTCCAGTGCTGCATAAGCCAGGATGGTGGCATATCCTTGTAATTCCAGTACTTGGGAAATAACAGCAAGGGGGATCAGGAGGTCAGGTCCTCCTTGGCTATCTAGTAAGTTTGGGACCAGTCTGGGCTACACGAGACCTTGTCTTAACAAACAAAACCTCCCCAAACAAGAGGGAAATCGCTGCAGATAGCAGCCTGAAATACAGTGCTGTAGTTCGTGCACCATGTTAGGCGAGAGCAGGGTTTCTAATGGTTTATCTGGAAGAGCAGCAGCTAAAAGTGCGTCCAGTAGATTGAATGCAGTTATGAGTGACTTTTCAAAGGTCACAAGATTTATAACTCACTCTGGGAGGTTAGAGCGGCTGTGAGTTATGTAGCTGTGATCAAAGCAGATTCAAAAGCATGACCAGCAGACCATGAAGAGCCAAGAAATCCTGAGGGTTGGTGGCCAGTCACAAGGCTACTGTGAACATAGAGTTGTCATTGATGAGGGATGTGGGCAGGACTTGACAAAACCTGATGGATTTGTGAGACATTCTCAAGGGAAAAATGAATACATTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCCATACATACATACATACATACATACATACATACATACATCTATTTTAAAGTACAGTAACAAGATTAAAAATGGTTCTTAGGCACCAAAGTTGTGTGTCCCAGGCAATTAAAGTTCATAGGAGTCAGAGCCCAGCAGGAGGACCTTCTTAAGGGAAGGATAGCCGGTTGAGCTGCAGTCACACCAAGGCCCTGAATAGAAATCTGTGAGAAAATATCAAGCAGACAGTAGGGCTAAACTAAAGAGATCGGAGTGTTAGCAAGTGTGGAGGCACCTCGGGGGACCTCAGAGGTGACCCTGAAGAGAGGAGTCCCCAGAGCCCTGCAGTGTTGCTGGGTGGGTAGAGAAAGAGCTGGTGTGTGGTCAGTGGCTTCATGAGCATCTTAGCTGAACCCCAGGCCTTCAGGAAGGAAGAGTAGGTGGGGAGCAGGGCAGAGAGTGTGGTCTGCTTTCTCTGGTCTCGAACTCTCAAATTCAAGGGCTCCTTCCCCCTCAGCCTCCTGGGTATACCACTGCCTGGCTTACATTTTTTTTCCACCATAACGATGTACTTTCTAAGAATTCATTAAAGCTCACTTTTTATTTTTTATTTATTTATTTGCCTGCAGATATCCACTCTGTTTGCTTTATTTATTACTGTTTTCAATTGTTGAAGTCATTTCTCACTATGTAGCTCAAGCTGGCCTTGTGATGCCCAGGCCTCGTGGCGCGCTGGGGATCTCAGGCATGAACCACCATGGCGGGCTCCAAGACTTAACAGAAATCTTCTGTTGTCAGTTTTAGATCTAGTCCCAGTTTTCCCAAAGACTGAGAAAAACATAAAATAATCTTGATTTTTCTTAGTTTAACTGGAATGTGTATATATATATATATATATATATATATATAATACATGTTTTATATGTTCAGAGTGAATGATAATATGTATGCACACCTGCATAGCCATGAGGACAACCCAATTCTGACATGTTGCTAATGTTCCCCCAG
Seq C2 exon
GAACACAGTGGGTCCACTGTCCCCTCCATTCTGAACAGGATGCAGACAAACCAGACACCGCCGACATATAATAAAACCAACAAGTTCACGCACGGCTTCCAGAACATAGTAGATGCTTATGGGATCGGCACTTACCGAGAGATTAACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000019302:ENSMUST00000044721:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.235
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(8.7=100)
A:
NA
C2:
PF0149614=V_ATPase_I=FE(6.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types