RnoINT0023444 @ rn6
Intron Retention
Gene
ENSRNOG00000036814 | Atp6v0a1
Description
ATPase H+ transporting V0 subunit a1 [Source:RGD Symbol;Acc:68405]
Coordinates
chr10:88938165-88941314:+
Coord C1 exon
chr10:88938165-88938377
Coord A exon
chr10:88938378-88941163
Coord C2 exon
chr10:88941164-88941314
Length
2786 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
3' ss Seq
ATGTTTCTAATGTTTCCTAGGAG
3' ss Score
8.59
Exon sequences
Seq C1 exon
GTTCTGAATCAGACAGAGGACCACCGCCAGAGGGTTCTGCAGGCGGCTGCTAAGAACATCCGGGTGTGGTTCATCAAGGTGCGGAAGATGAAAGCTATCTACCATACCCTGAACCTCTGCAACATCGATGTGACGCAGAAGTGCCTGATCGCGGAAGTCTGGTGCCCCGTCACTGACCTGGACTCCATCCAGTTTGCACTGCGAAGGGGCACG
Seq A exon
GTGAGTGTCCAGCCAGCAGTGAACCTGCTGGGCAGGAGGCGAGCCTCCTACTAATTAACTTCATATCTACGACACTCTTGCTTTCTTTTTTTTTTTTTTTTTAAAGATTTATTCATTTATTATATATAAGTACACTGTAGTGTCTTCAGATACACCAGAAGAGGGCATCAGATCTCTTTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGTCTTAACTGCTGAGCCATCTCTCCAGCCCCACTCTTGCTTTCTTTAATGTGTTCTTCTACCCCAAGAGTGTGCTCTGTTGTCTGGAGGACTGGCCGTATCCTACAGAGCGGAAGCTGCAGCTCAGTAGTGGGAAGGCATTTGGTCATGGCTGTGATTCCTCAGAGCAGACCATGCTGGAGCTTCCTGACTGACTCGCTCTCTCTGTTGACTGCTCCTACTTGGTGGATAGAGCAGCTGCTTTCTAAGTAAACCAGGGAGGGTGTGTATATGCATATGTATGGATATATGCACATGTATGTGTATAGGGAGTGGTTCTCACCTTTCCTAGTGCCGTGGCCCTTTAATACAGTTTTTCAGGTTGTGCTGAGCCCCAATCATAAAACTGTTTTCATTGCGACTTCATAACTGTGATTTTGCTACTGTATTGAGTGCTAATGTAAATATCTGATATGCAGAATATCTGATATAAGACCCCTGTGAAAGGGTGGTTCAAACCCCAAAAGAGGTCTTGACCCACAGCTTGAGAACCACTGATGTAGAGGGAGAGTGGACTTTTTTCTAACAAATATGACTAGAAAAAGTGTCAAGAAAAAGTAGAGTTTGGTGGAACAAGCAATTGGCTTGTCATGTGTGAGGCCCTGGGCTCAGTCCCCAGAGCTGAAAAAAAAAAAAAAAAAAAAAAAAAAGCAAACAATTAAAGGGCGACGAGTGATCAGGAGCCAGAATGGTGCGGTGGTTACATATGTGGGAAACCATGTACACAATTGTACACAAGGCAGGGGAGGCAGCGCTAGGAGATTGCTGGCTGGTCTTGCATGTACAAAGCCCTGGTATTTTTGTTTGTATGTTTTGCTTTTCAAGATAGGGTTTCCCTGTGTAGCCCCTGCTGTCTTAGCACTCACTCTGTAGACTAGGCTGGCCTTGAACTCAGAGCTCCACCTCCCTCTGCCTCCTGAGCGCTGCTAGCTCTTGCTGTGTGAAGCCCTAGTTTAATCTCTGGTGCTGCGTAAACCAGATATGGTGGCAAATCCTTATCCTTGTAATTCCAGTACTCGGGAAATAACAGCAAGGGGGATCAGGAGTTCAGGGCATCCTTAGCTATCTAGTAAGTTTGAGACCAGCCTGGGCTACATGAGACTTTGTCTTAACAAACAAAGCCTCCCAGTACAAAAGGAAAATCACTGCAGATAGCAGCCGAAGTACAGTGTGGTAGAGCACAGTGTTTATAATGGCTTCTGGAAGAGTAGCTGCTGAAAGTGCATCCAATCAATGAACCCAGTTACGAATGACTTTTCAAAGGTTACAGGATTTAAAACTTCACTCTGGGAGGTTAGAGAGGCCGTGAGTTGGGCAGCTGTGATCAAAGCAGATTTGAAAGCATGATCAGCAGACCATGAAGAGCAGAGGAATCCTGAGGGTCAGTGGCCAGTCATGGGGCTACTGTGAACATAGAGCTGTCATTGATGAGGGCTGTAGGCAGAACTTGATGAAACACGATGGATTTGTGAGACATTCTCAAGGGAAAACTGAGTGCATATCCTCAGGAATGAGAATTAAAAATGGTTCTTAGGCACCAAAACTGTGTGTCTCAGGTGATTAAAGTTCATGGGAGTCAGAGCCCAGCAGGAGGAGCTTCTTAATGGGAAGGCTAGCAGGTTGAGTGGCAGTCACACCGAGGCCCTGAACAGAAATCTGTGAGAAAATAGCAAGCAGGCAATGGGGCTAAACTAAAGAGATCGGACTGTTAGCAAGCGTGAGGACACCGAGACCTGCGGTGATCCTGGTGAGAGGAGTCCTCCAGAGTTCTGCAGTGCTACTGGTGGGCAGCAGAAGAGCTGGCGTGTGGTCAGTCTCTCCAGGCCTTCAGGAAGGACTAGGCGGGGAGCAGGGCAGAGTGTGTTTTGCTGTCTCTGGTTTTGAACTCTTTTTTTTTCTTTTTTCTTTTTTTCAGAGCTGGGGACCGAACCCAGGGCCTTGCGTTTGCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCTAACCCCAGGTTTTGAACTCTTAAATTCAAGTGATCCTTCCCGTCAGCCTCCTGGGTGTGCCACTACCTGGCTTACATTTTTTTCACCATAGTGATGTACTTTCTAAGGGAATTCATTAAAGCTCACTTTTTATTTATTTGCCTGCAGATATCCACTCTGTTTGCTTTACTCATTGCTGTTTTCAACTGTTGAAACCATTTCTCACTCTGTACCTCAAGCTGGCCTTCATTCCCAGCCCCTTAGCTCGCCTCGTGGAGTTCTGGGGATCACAGGCAAATACCACCATGGCATGCTCTGAGACACGACAGAAATCTTCTGTTGTCAATTTTAGATCTAGTCCCAGTTTTTCCAAAGACTGAGGAAAAACATAAAATAATCTTGAATTTTGTTAGTTTAATTGGAATGTATGTATACTGAAAAAGGTACGTGTTTTATGTGTGCAGCGTGAGTGAAAATACGTGCGCACACCTGCGTAGCCATGGGGACAACCCAATGCTGACATGTTTCTAATGTTTCCTAG
Seq C2 exon
GAGCACAGCGGTTCCACTGTCCCCTCCATTCTGAACAGGATGCAGACAAACCAGACACCCCCGACGTATAACAAAACCAACAAGTTCACGCACGGCTTCCAGAACATAGTGGATGCTTATGGGATCGGCACTTACCGAGAAATTAACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000036814:ENSRNOT00000055238:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.235
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(22.0=100)
A:
NA
C2:
PF0149614=V_ATPase_I=FE(6.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]