DreINT0035459 @ danRer10
Intron Retention
Gene
ENSDARG00000015174 | atp6v0a1b
Description
ATPase, H+ transporting, lysosomal V0 subunit a1b [Source:ZFIN;Acc:ZDB-GENE-050522-215]
Coordinates
chr24:7593473-7594225:-
Coord C1 exon
chr24:7594013-7594225
Coord A exon
chr24:7593624-7594012
Coord C2 exon
chr24:7593473-7593623
Length
389 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
TTTACCCCGAATTAATTTAGGAA
3' ss Score
6.4
Exon sequences
Seq C1 exon
GTATTGAATCAAACTGAAGACCACCGGCAGAGGGTTTTGCAGGCCGCTGCAAAAACTATGCGCGTGTGGTTTATCAAAGTGAGGAAGATGAAGGCCATTTATCACACGTTGAACCTCTGCAACATCGACGTTACACAGAAATGTTTGATTGCTGAGGTCTGGTGCCCCGTTTCTGACCTTGATTCCATTCAGTTTGCTTTGCGGAGGGGAACA
Seq A exon
GTAAGTAATATACATCAATCTAATAATCAAATAAATGCAAAGAGTCAATATTTATTGCATATATTCACCACCAGTCAAAAGCATGCCAATAGTTTTTGTTTTATTGTTATGCTACAAGCCTGTAGATCTCCAGTGATATGCTAAAATGCTTACAAATATTTTTGTAGATTATATAAATTGTGCCTAAACTTGTAATAAATGGTTTGGAGCACATAGTTGCACATATAACATACTGTAAAATTAAACTATTTCAATACAATTTAAGTAATCTTAGATTTATCTTAGAGTAAACTTTACTAATAAAGAATAAGCTGAAGCATTTAGCAATGTACTTTGTAAACGTTGTACCACAGTGGTAATTATACCATTTTTACCCCGAATTAATTTAG
Seq C2 exon
GAAAGAAGTGGGTCTACAGTTCCCTCCATCTTAAACCGAATGCAGACCAAACAGACTCCACCTACTTACAACAAGACCAACAAGTTCACCTCTGGATTCCAAAACATTGTGGATGCTTACGGCATCGGAACCTACCGAGAGATCAACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000015174:ENSDART00000041714:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.275
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(18.8=100)
A:
NA
C2:
PF0149614=V_ATPase_I=FE(13.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAAACTGAAGACCACCGGC
R:
GGTAGGTTCCGATGCCGTAAG
Band lengths:
342-731
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]