HsaINT0016815 @ hg19
Intron Retention
Gene
ENSG00000076108 | BAZ2A
Description
bromodomain adjacent to zinc finger domain, 2A [Source:HGNC Symbol;Acc:962]
Coordinates
chr12:57004193-57005417:-
Coord C1 exon
chr12:57005357-57005417
Coord A exon
chr12:57004302-57005356
Coord C2 exon
chr12:57004193-57004301
Length
1055 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAAT
5' ss Score
4.69
3' ss Seq
CCCATGTGCTTCTCTGGCAGGTG
3' ss Score
10.06
Exon sequences
Seq C1 exon
GTGATGTCATGAGGAGACGTATTGCTACCCCAGAAGAAGTTCGTCTTCCCCTCCAACATGG
Seq A exon
GTAAATGCTCTAGTTTGCTACATTTATTGACCTTGACAAGTTTAATGCACAACTCTAGAAAGAAGGGAATGCCTCTTTTCCTCTGAGGTGGGGGAGGAATGGGCCAGACAAGAGTAGATTACAGGACAGTTATCTGCAGTGATAATGTTTCTTGGCATGAGATTCCTAGGTTTTCCTTCTTCTCTCAAGGTCTGTCTTCCATCACCTATTCTTTTTTCATCTTGTAGTGACTCAATTTTGCCCAAGGAGCTCCAGCTATTATCTTTTCCAAACCCTAGGGCTCACATCCAAACCAGCTGGCTTGTCCTATTTCTGTGGACAAGGGATAGTAATGAATGAGGAGTGACTTAGTACTAATGAATTGAGGTGGTTTTGTTGTTTTAATGCTCTTAGGAGAGGTAAGGGCAGGAACAGTACATGACCAAAATGAACAAACTAGCTGACACCAGGGCCTTGTGGAAATAACTGCCTTCCTGGATCTTCCCCACCCCTGCCCCTCAAGGCTACTTGTGGTCACCAAGTCTGAGTACTGCTTAAAATTTTGAGAGAAAGATTAGAGTTAGTCTTAGAACTAACTCTGACTAACTTTGTGTTCTGCTCAGAACACAGAGTTCCTAACTAAACCCTGGCATATTGAGTCTTTTCATGGAATCAGCAGCAAATTTATTTTTCTGCTTGCCTCCCTGCCCTTTGTCTTCTGTCTTTATTCCCCTTAGGTCTTTATCCTCTTTACTGGAAATCCAGTAACTGCCCTGAATGGCTCAGGGAGGGGTTTCTGGCAGCTTATCTCACTGATTTTGTAAAGGAGGGATGGAGATCTCTCTGAGCTTGTGCAGTTTGGTGTAGTGCTTTTCTCCTAAGGGCCTTGATGTATTTGCTGGAGCTCAAGTCAGCCTTCTAGCCAAGCTTATCTCTCTTGGTGCTTTTGCATCTGCATGCAGTTCTAGAGATACAAATGTGGGGAGGGCCATCTGCTCAGAGGGCTTCGCGCTTAGGTGGCATGGGAGTGGGTAGGGGTGTGACCTGGCGGCAGGGCCCATGTGCTTCTCTGGCAG
Seq C2 exon
GTGGCGGAGAGAGGTGCGCATCAAGAAGGGCAGCCACCGATGGCAGGGGGAGACCTGGTATTATGGCCCCTGTGGGAAGAGGATGAAGCAATTTCCAGAAGTGATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000076108-BAZ2A:NM_013449:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.571 A=NA C2=0.027
Domain overlap (PFAM):
C1:
PF0142914=MBD=PU(17.3=61.9)
A:
NA
C2:
PF0142914=MBD=PU(46.9=95.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)