MmuINT0024135 @ mm9
Intron Retention
Gene
ENSMUSG00000040054 | Baz2a
Description
bromodomain adjacent to zinc finger domain, 2A [Source:MGI Symbol;Acc:MGI:2151152]
Coordinates
chr10:127552081-127553225:+
Coord C1 exon
chr10:127552081-127552141
Coord A exon
chr10:127552142-127553116
Coord C2 exon
chr10:127553117-127553225
Length
975 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAAT
5' ss Score
4.69
3' ss Seq
CCCATGTGCTTCTCTGGCAGGTG
3' ss Score
10.06
Exon sequences
Seq C1 exon
GTGATGTACTGAAGAGACGTATTGCTACCCCAGAAGAAGTTCGTCTTCCCCTCCAGCATGG
Seq A exon
GTAAATGCTCTAGATGGCTACACACATTGACCTCAAGAAGCTCACGAATGATAGGAAGAGAGGAGCTCCTCTCTTCATCTTGGTGGGAGAGGACTGGGCTGGACAGGAGTGGACTACAGGACAGTATGGAGGGTGCAGGACTGGGCAGGACAGGAGTGGACTACAGGACAGTACGGAGGGTGTGGAACTCCTGGAAGAGCAGCAAATGCTCCTAACTGCAGGGTTATCGCTCCAGACCAGTTCTCTCTTCTTAGGGTCTGTCTCTCACATTCTTTGTTCATCCTTGGTCTTGATCCTTTTTCGGACTAAGGCCCAAGTATCCAAAGGAGCTACATAGAACTGTTTCCATAGAGCGGGACAGCAGTTAAGGGAGAGAGGCTTCCTACCAGTGAACTGGGTGGTTCTGTGGCAGTGATTTCTGTTGGAATGCTCTCTGTGGAGTTAAGGTCTAAAACAGTAATTTTGGTGACCAACCCAGCTGTTGTCAGAGGCCTACATTTTCTAGGCTACTTGATGCTACCAAGTCTTCGTGCAACTGCAATATTTAAGACAGAAGTAAGGCTGAGTTTTATACTACACTGCTCAGAACATAGTCATACGACCTCGCCTCCTTAGTTATTCCATGATGTCGGCCTCTACGCGCCTACTCTTACACGTTGTTCTGAGCCAGGGCAGTTAGTTTCCAGCTGCTCCTTTCAGTAGCTTTATAAAAAGGAGGGTGGGGAATCTTTGTACATGTTTGCCATTTAGTGCAGTGTTTCCTCTGAAGTACTTGCTTCAGCTCAAGCACTGTGAGCCTGTTTATCAAGCTTGTGTGCTGTGCTGTTTCTGTATGCAGGACTGTGTAGGACTGTCTGCATGCAGGGCTAGTGAGACAGCTGGAGGGGGAGTCTGCTCAGTGGGCTTGGCTCCTGGGTGGCATGGGAGTGGGTAGGGGTGTGACCTGGTGGCAGGGCCCATGTGCTTCTCTGGCAG
Seq C2 exon
GTGGCGAAGAGAAGTGCGCATCAAGAAGGGCAGCCATCGGTGGCAGGGGGAGACTTGGTACTATGGCCCCTGTGGGAAGAGAATGAAGCAATTTCCAGAAGTTATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040054-Baz2a:NM_054078:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.536 A=NA C2=0.108
Domain overlap (PFAM):
C1:
PF0142914=MBD=PU(17.3=61.9)
A:
NA
C2:
PF0142914=MBD=FE(48.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: