DreINT0036855 @ danRer10
Intron Retention
Gene
ENSDARG00000102974 | baz2a
Description
bromodomain adjacent to zinc finger domain, 2A [Source:ZFIN;Acc:ZDB-GENE-041010-202]
Coordinates
chr23:6777578-6780175:-
Coord C1 exon
chr23:6780115-6780175
Coord A exon
chr23:6777687-6780114
Coord C2 exon
chr23:6777578-6777686
Length
2428 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
GTGCTGTTTATCTTTGCTAGCTG
3' ss Score
6.46
Exon sequences
Seq C1 exon
GAGACACCCCTAGACGCCGGATTGCAAGTGAAGAGCAAGTCCAGTTTCCTTTGGCACATGG
Seq A exon
GTGAGGGTGCTCTTTATGTCAACTTTTTTTCTTCAAGTGTGCTTCTAAAGCTAATAAAATGCTTGCATTCAGTCATGATAACTGATCAAAAACCCAGCTCCCAATCATACTATCATGTGCCACAGCCATATCACCCTGCAGCCCAAGATCGGTTACTCACTAAAGCTAAGCAGGGCTGAGCCTGGTTAGTACCTGGATGGGAGACCACTAGGGAACGCTAGGTTGCTGTTGGAAGTGGTGTTAGTGAGGCCAGCAGGGGGCGCTCAACCTGTGGTCTAAGTGAGTCCTAATGCCCCAGTAAAAAGTGAAGGGGACACTACACTGTCAGTGGGCGCCGTCTTTCGGATGAGACGTTAAACCGAGGTCCTGACTCTCTGTGGTCATTAAAAATCCCATGGCACTTCTCGTGAAAAAGCAGGGGTGTAATCCCGGTGTCCTGGCCAAAGTCCCTCTATCGGCCCTTACGATCATGGCCTCCCAATCATCCCCGTCCACTGAATTGGCTCTATCACTGTCTCTCCACTCCACCAATAGCTGGTGTGTGGTGAGCTCACTGGCGCCGTTGTCCTGTGGCAGCCGTCGCATCATCCAAGTGGATGCTGCACACTGGTGGTGGTGTGGAGAGACCCCCCTCATGATTGTGAAGCGCTTTGGGTGTATGGCCATATACAATAAATGCGCTATATAAATACACATTACATTACATTACATTACATACTAGTAACATTTCTTAAAAAAAAAAAGGGGGAAATATAGTAGCTGATAGGAGTGTAGAGTATACACATATGCATAATGAATACAATTTTAACAACAATATATATTTTTTTATCAATTGTTTTTTTTTTTTTGTGTATAATTTTTATTATTATTTCCAGTGACGTACGGTGATAGCCATTATGCCTACAATTCATTAAACAAGAAGCTTTTGCTGCATCCCGATTCGCATACCAATCATCCTAAATAGTATTCAAAAATACAGTTAGCATGTCACATGTCCCAAACCGCAGTATGTTGAAAAGAGTATGCCAAAGATTCCTGGATGATAAACTATTTCTGGTAGAAATTTGTAGTGTATAACATCCCTACTCTTAACCCATAATATTGACCACAATACATTGCAAGTTGGTTGTGAATTTGATTAGAACTACAAACTTGGTGGACACACAAGACCAATCGTCAAGTACAGGTGTTTATATGACTATTAATTAATATCTAGCCAACTGGTAAATATCTGCATCACATTTTCTGTGTTATTACATCTGCAACAAAGATGTCAATTTCGCATACTATTTGTCCTAAATAGTATTTAAAAATTCAAGAAGTATGTCCCAAATCATTGTATGTTGAAAAAGAGTACGCCAAAGGTTCCTGGATGGTGTATTTCTAGTAGAAATTCAAAGTGTAGAACTATCTGTACGCTTAACCGATAATATTGCAGATAATTATGTGAATTTGATTAGAACTAAAAACTCGGATTAAGTGTAAACCAGTAAATCCATGGTGAGGTAAGTGACGTTATAAACTACACTGCCCTTCTTTTTGAAGAAGTACCCGCTTTGTGTCCTCAGGAGTTCGTTCTTCCAAGTCTGAACTTCCTAGGACGCAAGTCCGAACTTTGCATAATTGGTATTGAGAAACAGGCAACATTTCTGTTTAAAAGTGTTATCTTTCTAACTCTGTTTGTGGTATCAGCGAATTGATGTTCTTTGTGTATTAAATAATCAGTTCTGTTCAAAAGTTAACAACTGTGTGAGGTGTTTCTTATGCGGTGCCTACATGCGGGATCATGAACTTGACATTGTTCTCTCTTCAGGCTGTCGTTATCAGTCTTGTACAATTTTTGTTCCTTTTTTTGAAAGTCACTATCCTGGAGGTTTTCTTTGGTTATGTAAGCAAATTAGAATTAAAAAAAAAATGTGGTTCTTTCCCATTTACTGCTTTCTAATTTTGTCCAACTATGAAGACTTCCGCAGCTGAGAAATAAAAATATGTGAAGAGGGTCAATTGTGAGAAGCGGCCACTTATGGGGAATACAAATATTAAACCTGACTCTGTAAATTAATCTATATATGATCATTTATCAATAATGCACAATCAGATAAGATATGGGCATCAGCTCAACCTTGAAATATTGGCAGAAATCCAATATTGTGCATCCATACTACATTTAGCAAAAGCATTTCAATGTATTTAATACAACCCCCTTTTGTTGATTATCTGGAATACCTAACTGTTTAAATAGCTATATCGTGAACTTTCTACTGTTTACTGTACTGTAAAATTGATTTTATTTATAGCGACCTCCCCTAGCCTAAAGCAAGGCATTCAGTGTCCATTTATTCTGCAGATTCAAACACAGAATTATTGTGTGACAAATAATTTGTTAAGGTATGGGTATCCTGTTTGATGTGCTGTTTATCTTTGCTAG
Seq C2 exon
CTGGAAGCGGGAGATCAGAGTTCGTAGACTTGAGGACCGCCTGAAAGGGGAGACATGGTACTACAGCCCCTGCGGCCGAAGGATGAAGCAGTTCCCTGAGGTCATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102974:ENSDART00000157828:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.557 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0142914=MBD=PU(16.9=61.9)
A:
NA
C2:
PF0142914=MBD=FE(46.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]