RnoINT0024812 @ rn6
Intron Retention
Gene
ENSRNOG00000053881 | Baz2a
Description
bromodomain adjacent to zinc finger domain, 2A [Source:RGD Symbol;Acc:1305037]
Coordinates
chr7:2535410-2536748:+
Coord C1 exon
chr7:2535410-2535470
Coord A exon
chr7:2535471-2536639
Coord C2 exon
chr7:2536640-2536748
Length
1169 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAAT
5' ss Score
4.69
3' ss Seq
CCCATGTGCTTCTCTGGCAGGTG
3' ss Score
10.06
Exon sequences
Seq C1 exon
GTGATGTACTGAAGAGACATATTGCTACCCCAGAAGAAGTTCGTCTTCCCCTCCAACATGG
Seq A exon
GTAAATGCTCTAGATGGCTACACACTTTGACCTCCACAAGCTCAATGAGTGATAGAAAGAAAGGAGCTCCTCTCTCTTCATCTCGGTGGGAGAGGACTGGCCCGGACAGGAACAGACTACAGGACAGCAAGGAGTGTATTGGAGTCACAGGCTGTTGTGGATATTGGAATCTGAGCTCAGGCCTCCTGGAAGAGCATCAAATGCTCCTAACTGCTGGGCTGTCACTCCAGACCAGTTCTCTCTTCTTAGTGTCTGTCTCCCTCACAAGTCTTTGTCCATCTTTTGGCTACTTGGTCTTTATCCTTTTCCAGACTAAGGCCCAAGTATCCAGAAGAGCTAGATAGAACTGTTTCAGTAGAGAAGAAGGCAGCAGTAAAGGGAGGAGGCTTCCTACCAGTGAGCTTAGGTGGTTCTGTGGCATGGATTTCATGTTCTCTGGAGAGTTAAGGTCCAGAGCAGTAACTGTACTTTAGTGACCAACCTAAAGGTTGTTAGAGGCCTAGATTTTCTAGGCTACTTGATGCCACCAAGTCTTAGTACTACTGCAATATTTAAGACAAGGATAAGGCTGAGTTTTATAATATACTGCTCAAAGAGCATAGTTACTGACTAGAACCTAGCCTACTTAGTCATTTCATGGCATCAGCTCCAGGCTTCCTCTTTTTTTTTTTTTTTAATTTATTTATTTATTATATATAAGTACACTGTAGCTGTCTTCAGTCACACCAGAAGAGGGCATCGGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTCTGGAAGAGCAGTCAGAACTCTTAACCGCTGAGCCATTTCTCCAGCCCTCCAGGCTTCCTCTTATACTTTGTTCTGCACTGAGCCAGGGCAGTTAGGAATCCCAACTCTCGTTTCAGTAGCTTTACAAAAAGGGTGGGGGGGGTCTTAGTACATATCTGCCATTTAGTGCAGAGTTTCCTCCTGAAATACTGTCTTCGACTCAGACACTGTGTGCCTGTTTCTGTATACAGGATTATGTAGGACTGACTGCATGCAGGGCTAGTGAGACAGCTGGAGGGGGAATCTACTCAGTGGGCTTGGCTCCTGGGTGGCATGGGAGTGGGTAGTGGTGTGACCTGGTGGCAGGGCCCATGTGCTTCTCTGGCAG
Seq C2 exon
GTGGCGAAGAGAAGTGCGCATTAAGAAGGGCAGCCATCGGTGGCAGGGGGAGACTTGGTATTATGGCCCCTGTGGGAAGAGAATGAAGCAATTTCCAGAAGTTATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053881:ENSRNOT00000079383:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.476 A=NA C2=0.108
Domain overlap (PFAM):
C1:
PF0142914=MBD=PU(17.3=61.9)
A:
NA
C2:
PF0142914=MBD=FE(48.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]