HsaINT0016828 @ hg38
Intron Retention
Gene
ENSG00000123636 | BAZ2B
Description
bromodomain adjacent to zinc finger domain 2B [Source:HGNC Symbol;Acc:HGNC:963]
Coordinates
chr2:159395769-159397389:-
Coord C1 exon
chr2:159397345-159397389
Coord A exon
chr2:159395835-159397344
Coord C2 exon
chr2:159395769-159395834
Length
1510 bp
Sequences
Splice sites
5' ss Seq
CAGGTCTGT
5' ss Score
6.84
3' ss Seq
CATTTTATCTGGCCTAATAGGAA
3' ss Score
7.41
Exon sequences
Seq C1 exon
GAAAAAGAAATGAGAAGACAACAAGCTGTTCTTCTGAAACATCAG
Seq A exon
GTCTGTATATGTATAGTTATACAATTGTTGAATGTACATTTTATAATATTGCTTAAACCTATTTGGGGGAAAATCTTCAAAATATTTTCTTTAAAATTTCTGATATAATTTCTGCTTAAGTTTTTCCTTCAACCTACAGTTTATTGCCTTGCTTTGGTATTGGTGTCTTTTTGGGGGGTTAAAAAATTGGTTTTATGACTCTGTGATTTCTGTTTCATAATGTTGTGCCAACTCTTTCTACCAGGAGTTGGAGAGGCATAGACTAGATATGGTATGGGTATGTTTATTTTTGTACATCTAACACCGCATTGTGATTTGGTTGTGATATGGTTGTCATAGCAATGCATAAAGTGTAGCACTGGCTGCTGTCATATTACATACTGCTGCATGGCTTTACAGCACAGTGCATTGCATACATCTGCTTGTCTGTCTATAAAGAAGTATGATGCATCTCCAAGATTTTACATTGAATTGTACAAGCCTTAAATAAGGCTGCTCTCTAAAAATTTACATTACTGATGTCACAAAGAAAGTTGGATCACTATACAATTAGATATAATTATGACCCGTATTCTCCCATCATTCTAGATGCAAAACTGCCATTGAATACAGTGGGAATTTTGAGTTTGTTTGATGAGAGAATATGAAATATATTCTGGTTTCATAGACAAATTTTAGAAATAATTTTAGAAATATCCCTTTGGAGAAACCAAATATGCTTAAACAAAAAAATCGATGAGATATTATAAATAAGTGATTTTTTTATTTTAAAAGTAAAGTGAGAATGTCAAATTAAACTAGTGCTTACCTTATTTTCATACTGTGCCTTTAAGATTCCACCTGTGAGCCCATGGTGCAGCTTTTGTGGCTTTAAATAGAGTATCAGGTGGCAGACATCAGTAAATAGGAATATCCCATTTCATTGGTGGTGTATGTGAAACAAGACTAGTTTAACTAAATTGGTATAAAAGCCTTAAAAAAACTCTAATTTATTGGTGGCTTATTGGATTTGCAAAATGATTTTGTACTGAAAATAACCTACTCTAAAATCATGAAGTTAAAGTGACTATAAATCAATTTCTTCCTGATCTAAAATTTTAAGAACAACACAACCGTTAGTTTAATTGGCCATAGTATTTGTGGTTTTTCTAATAGCAGATGTAAGGTAACTGACCTGTTCCAGCCAACCATTATGCTTTTTGTTCTGCCAGCTTTTGAAGGAGCATCACAACTGACCATAAGTAAATCTTGTATGCTTCTGTTTACACTGTCTCCATGTTCATTGCTTTACCTTTTTGCTTTTGATTGTTGTATTTGCTTTCTAAACCTGAACTAAAACATGCACAGACTGGCCATTCTTGTCTTATATTTAGTATTTACTGTGACTTGTCTATAAATGCTAAACATGCTATACTGAGTTTTTGTTTTGTTTTTGTTTTTGTTTTTTCATTGGAAAATCAAACTGTTAATTGTGGCTGAGTTATTTTCCACATTTTATCTGGCCTAATAG
Seq C2 exon
GAACGAGAGCGAAGGCGACAACACATGATGCTTATGAAAGCTATGGAAGCTCGTAAAAAAGCAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123636:ENST00000392783:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.803 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development