RnoINT0024822 @ rn6
Intron Retention
Gene
ENSRNOG00000056984 | Baz2b
Description
bromodomain adjacent to zinc finger domain, 2B [Source:RGD Symbol;Acc:1309801]
Coordinates
chr3:46003221-46004544:-
Coord C1 exon
chr3:46004518-46004544
Coord A exon
chr3:46003287-46004517
Coord C2 exon
chr3:46003221-46003286
Length
1231 bp
Sequences
Splice sites
5' ss Seq
ATGGTATGG
5' ss Score
6.63
3' ss Seq
AATTTTATCTGGCCTAACAGGAA
3' ss Score
7.92
Exon sequences
Seq C1 exon
GAGTTGGAGAGGCATAGACTAGATATG
Seq A exon
GTATGGGTATGTTTATTTCTGTACATCTAACACCGCATTGTGATTTGGTTGTGATATGGTTGTCATAGCAATGCATAAAGTGTAGCACTGGCTGCTGTCATATTACATACTGCTGCATGGCTTTACAGCACAGTGCATTGCATACATCTGCTTGTCTGTCTATAAAGAAGTGTGATACGTCTCTACGATTTGTCATTGAATTGCATAAAACTCCTGTTTAAAAATGTACATTACTGATGTCACATGGAAAGTTGACTCACTATCCATTTAGAGACACTCATGACCCATATTCTCCCATCCTTGTAGATGCAAAACTGCCATTAAGTGCAATGGGAATTTTGAATTTGCTCGATGAGAGAATATGAAATATGAAGTATATCTTAGTTTTATAGTCAAATTTTAGAAATACCCCTTGGGGGACCAAATACATTGGAACTAAAATATTGATTAAACATTAATAATATGAAATTTTTACATTGAAATTAGTTACCAAATTAAGGTAATTCTTACCTTATTTAATACTGGGCATTTTAGATTACTCTTAGCCCATGGCACAGCTTTTTGTGCCTTAAGCAGTGCATGAAGCGTCAGACATCAGTAAATAGGAATATCACATTTCATTAGTATATGTATATGAACCATGACTAGTTTAATTTTTAATTCATATAAACACTTTTTAAAAAAATCTTCCTAATTTATTGGTGGATTATTGGATTTAAAAATGATTTTATACTTGAAATTAACTTAATTCTAAAACCACGACGCAAAAATGATTATGGATTAATTTTACCTGATCTTAAATTTTAAGAGCAGTATATATAACCTTCCGTACAATTGGCCGTAGTCTTTTGTGGTTTCTCTGATAGCAGATGTAAGGTAACTGACCTGTTCCAGCCAACCATCATGCTCTTGTTCTGGCGGCTTCTGAGGAGCACCCCAGCTGACCATCAGTAAACCGTGTGCTCTGTTACACTGTCTCCATGCTCATTGCCTCACCTTGCTGTTGATCGGTTGCTCTTGTATTTGCTTTCTAAACCTGAACTAAAACATGCACAGAATGGCCATTCTTGTCTTATATTTAGTATTTACCGTGACTTGTCTATAAATGCTAAACATGCTCTATTGAGTTGTTGTTTCTGTTGTTGTTACTGTTGTTGTTGTTGTTCTCCATTTGGAAACCAAGCCTTTAACTGTGGTTGAGTTGTTTTCCCAATTTTATCTGGCCTAACAG
Seq C2 exon
GAACGGGAGCGAAGGCGACAGCATATGATGCTTATGAAAGCTATGGAAGCTCGTAAAAAAGCAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056984:ENSRNOT00000081302:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]