RnoEX0014190 @ rn6
Exon Skipping
Gene
ENSRNOG00000056984 | Baz2b
Description
bromodomain adjacent to zinc finger domain, 2B [Source:RGD Symbol;Acc:1309801]
Coordinates
chr3:46003221-46004827:-
Coord C1 exon
chr3:46004783-46004827
Coord A exon
chr3:46004518-46004544
Coord C2 exon
chr3:46003221-46003286
Length
27 bp
Sequences
Splice sites
3' ss Seq
GTGCCAACTCTTTCTACCAGGAG
3' ss Score
7.07
5' ss Seq
ATGGTATGG
5' ss Score
6.63
Exon sequences
Seq C1 exon
GAGAAAGAACTGAGAAGACAGCAGGCTGTCCTTCTGAAACACCAG
Seq A exon
GAGTTGGAGAGGCATAGACTAGATATG
Seq C2 exon
GAACGGGAGCGAAGGCGACAGCATATGATGCTTATGAAAGCTATGGAAGCTCGTAAAAAAGCAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056984_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=50=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGAACTGAGAAGACAGCAGGC
R:
CATCATATGCTGTCGCCTTCG
Band lengths:
72-99
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]