DreEX0016647 @ danRer10
Exon Skipping
Gene
ENSDARG00000057782 | baz2ba
Description
bromodomain adjacent to zinc finger domain, 2Ba [Source:ZFIN;Acc:ZDB-GENE-070615-37]
Coordinates
chr6:11732505-11738361:+
Coord C1 exon
chr6:11732505-11732549
Coord A exon
chr6:11734263-11734289
Coord C2 exon
chr6:11738296-11738361
Length
27 bp
Sequences
Splice sites
3' ss Seq
CTGCCAACTCTCTCTCTCAGGAG
3' ss Score
8.55
5' ss Seq
ATGGTATGG
5' ss Score
6.63
Exon sequences
Seq C1 exon
GAGAAGGAGATGAGACGCCAACAGGCTGTTATTCTCAAGCACCAG
Seq A exon
GAGATGGAGAGGCATAGACTAGATATG
Seq C2 exon
GAGAGGGAGAGGAGGAGACAGCACGTTATGCTAATGAAAGCTGTGGAGGCTCGGAAAAAAGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057782-'28-25,'28-24,29-25
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.867 A=1.000 C2=0.773
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAAGGAGATGAGACGCCAAC
R:
TTTTTCCGAGCCTCCACAGC
Band lengths:
104-131
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]