DreALTD0004092-2/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000057782 | baz2ba
Description
bromodomain adjacent to zinc finger domain, 2Ba [Source:ZFIN;Acc:ZDB-GENE-070615-37]
Coordinates
chr6:11734263-11738361:+
Coord C1 exon
chr6:11734263-11734289
Coord A exon
chr6:11734290-11734295
Coord C2 exon
chr6:11738296-11738361
Length
6 bp
Sequences
Splice sites
5' ss Seq
TGGGTATGT
5' ss Score
7.43
3' ss Seq
GAATCATTCTGTCTTTTCAGGAG
3' ss Score
9.07
Exon sequences
Seq C1 exon
GAGATGGAGAGGCATAGACTAGATATG
Seq A exon
GTATGG
Seq C2 exon
GAGAGGGAGAGGAGGAGACAGCACGTTATGCTAATGAAAGCTGTGGAGGCTCGGAAAAAAGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057782-29-25,30-25-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.773
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGATGGAGAGGCATAGACTAGA
R:
TTTTTCCGAGCCTCCACAGC
Band lengths:
86-92
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]