DreEX0016659 @ danRer10
Exon Skipping
Gene
ENSDARG00000057782 | baz2ba
Description
bromodomain adjacent to zinc finger domain, 2Ba [Source:ZFIN;Acc:ZDB-GENE-070615-37]
Coordinates
chr6:11732505-11738756:+
Coord C1 exon
chr6:11732505-11732549
Coord A exon
chr6:11738296-11738361
Coord C2 exon
chr6:11738616-11738756
Length
66 bp
Sequences
Splice sites
3' ss Seq
GAATCATTCTGTCTTTTCAGGAG
3' ss Score
9.07
5' ss Seq
GAGGTGTGC
5' ss Score
5.35
Exon sequences
Seq C1 exon
GAGAAGGAGATGAGACGCCAACAGGCTGTTATTCTCAAGCACCAG
Seq A exon
GAGAGGGAGAGGAGGAGACAGCACGTTATGCTAATGAAAGCTGTGGAGGCTCGGAAAAAAGCTGAG
Seq C2 exon
GAACGCGAACGCCTCAGGCAGGAGAAACGTGACGAGAAACGGCTCAACAAAGAGCGCAAAATGGAGCTCCGGAGGCTGGAGCTGGAGATGATCCGTGAGATGAAGAAGCCAAATGAAGACATGTGTTTGACGGATCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057782_MULTIEX1-5/5=3-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.867 A=0.773 C2=0.702
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGACGCCAACAGGCTGTTAT
R:
TGTGATCCGTCAAACACATGTCT
Band lengths:
173-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]