HsaEX6016155 @ hg19
Exon Skipping
Gene
ENSG00000123636 | BAZ2B
Description
bromodomain adjacent to zinc finger domain, 2B [Source:HGNC Symbol;Acc:963]
Coordinates
chr2:160245856-160253900:-
Coord C1 exon
chr2:160253856-160253900
Coord A exon
chr2:160252280-160252345
Coord C2 exon
chr2:160245856-160245996
Length
66 bp
Sequences
Splice sites
3' ss Seq
CATTTTATCTGGCCTAATAGGAA
3' ss Score
7.41
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
GAAAAAGAAATGAGAAGACAACAAGCTGTTCTTCTGAAACATCAG
Seq A exon
GAACGAGAGCGAAGGCGACAACACATGATGCTTATGAAAGCTATGGAAGCTCGTAAAAAAGCAGAA
Seq C2 exon
GAAAAAGAGCGGTTGAAACAAGAAAAACGTGATGAGAAAAGATTAAATAAAGAGCGTAAACTAGAGCAGCGAAGATTAGAATTAGAAATGGCAAAGGAACTAAAGAAGCCTAATGAAGACATGTGCTTAGCAGACCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123636-'34-37,'34-35,36-37=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.801 A=1.000 C2=0.769
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACAACAAGCTGTTCTTCTGA
R:
TGGTCTGCTAAGCACATGTCT
Band lengths:
167-233
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)