BtaEX6009632 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020654 | BAZ2B
Description
bromodomain adjacent to zinc finger domain, 2B [Source:HGNC Symbol;Acc:HGNC:963]
Coordinates
chr2:37076971-37101701:+
Coord C1 exon
chr2:37076971-37076997
Coord A exon
chr2:37078234-37078299
Coord C2 exon
chr2:37101561-37101701
Length
66 bp
Sequences
Splice sites
3' ss Seq
AATTTTATCTGGCTTAATAGGAA
3' ss Score
6.84
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
GAGTTGGAGAGGCATAGACTAGATATG
Seq A exon
GAACGAGAGAGAAGGCGACAACATATGATGCTTATGAAAGCTATGGAAGCTCGTAAAAAGGCAGAA
Seq C2 exon
GAAAAAGAACGATTGAAGCAAGAAAAACGTGATGAGAAAAGATTAAATAAAGAACGTAAACTAGAGCAACGAAGATTAGAATTAGAAATGGCAAAGGAACTAAAGAAGCCTAATGAAGACATGTGCTTAGCAGACCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020654-'33-41,'33-35,36-41=AN
Average complexity
A_C2
Mappability confidence:
93%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.693
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTTGGAGAGGCATAGACTAGA
R:
TTTTGGTCTGCTAAGCACATGTCT
Band lengths:
167-233
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]