GgaEX0019018 @ galGal4
Exon Skipping
Gene
ENSGALG00000012579 | BAZ2B
Description
bromodomain adjacent to zinc finger domain protein 2B [Source:RefSeq peptide;Acc:NP_990008]
Coordinates
chr7:36067774-36084048:-
Coord C1 exon
chr7:36084004-36084048
Coord A exon
chr7:36082489-36082554
Coord C2 exon
chr7:36067774-36067836
Length
66 bp
Sequences
Splice sites
3' ss Seq
AATCTTATCTGCTTCAATAGGAA
3' ss Score
7.09
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
GAAAAAGAGATGCGAAGGCAACAAGCTGTTCTTCTCAAGCACCAG
Seq A exon
GAACGAGAGAGGAGAAGACAGCATATGATGCTTATGAAAGCCATGGAAGCACGTAAAAAGGCGGAA
Seq C2 exon
GATGATGGAGACCAGACAGTGAGTGTTGAAGAACTAGAGAAGCAGATTGAAAAACTGACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012579_MULTIEX3-4/11=2-11
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.800 A=1.000 C2=0.952
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0334410=Daxx=FE(5.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGAAGGCAACAAGCTGTTCT
R:
TTGTCAGTTTTTCAATCTGCTTCTCT
Band lengths:
95-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]