HsaEX6016155 @ hg38
Exon Skipping
Gene
ENSG00000123636 | BAZ2B
Description
bromodomain adjacent to zinc finger domain 2B [Source:HGNC Symbol;Acc:HGNC:963]
Coordinates
chr2:159389345-159397389:-
Coord C1 exon
chr2:159397345-159397389
Coord A exon
chr2:159395769-159395834
Coord C2 exon
chr2:159389345-159389485
Length
66 bp
Sequences
Splice sites
3' ss Seq
CATTTTATCTGGCCTAATAGGAA
3' ss Score
7.41
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
GAAAAAGAAATGAGAAGACAACAAGCTGTTCTTCTGAAACATCAG
Seq A exon
GAACGAGAGCGAAGGCGACAACACATGATGCTTATGAAAGCTATGGAAGCTCGTAAAAAAGCAGAA
Seq C2 exon
GAAAAAGAGCGGTTGAAACAAGAAAAACGTGATGAGAAAAGATTAAATAAAGAGCGTAAACTAGAGCAGCGAAGATTAGAATTAGAAATGGCAAAGGAACTAAAGAAGCCTAATGAAGACATGTGCTTAGCAGACCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123636-'85-73,'85-69,90-73
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.803 A=1.000 C2=0.771
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACAACAAGCTGTTCTTCTGA
R:
TGGTCTGCTAAGCACATGTCT
Band lengths:
167-233
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains