RnoEX6016962 @ rn6
Exon Skipping
Gene
ENSRNOG00000056984 | Baz2b
Description
bromodomain adjacent to zinc finger domain, 2B [Source:RGD Symbol;Acc:1309801]
Coordinates
chr3:45998352-46004544:-
Coord C1 exon
chr3:46004518-46004544
Coord A exon
chr3:46003221-46003286
Coord C2 exon
chr3:45998352-45998492
Length
66 bp
Sequences
Splice sites
3' ss Seq
AATTTTATCTGGCCTAACAGGAA
3' ss Score
7.92
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
GAGTTGGAGAGGCATAGACTAGATATG
Seq A exon
GAACGGGAGCGAAGGCGACAGCATATGATGCTTATGAAAGCTATGGAAGCTCGTAAAAAAGCAGAA
Seq C2 exon
GAAAAAGAACGATTGAAGCAAGAGAAACGTGATGAGAAAAGATTGAATAAGGAACGCAAACTAGAGCAACGGAGATTGGAGTTAGAAATGGCGAAGGAGCTTAAGAAACCCAAGGAAGACATGTGCTTAGCAGACCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056984-'38-39,'38-38,40-39=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.681
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTTGGAGAGGCATAGACTAGA
R:
TTTTGGTCTGCTAAGCACATGTCT
Band lengths:
167-233
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]