GgaEX0019018 @ galGal3
Exon Skipping
Gene
ENSGALG00000012579 | BAZ2B
Description
NA
Coordinates
chr7:38215002-38220094:-
Coord C1 exon
chr7:38220068-38220094
Coord A exon
chr7:38218826-38218891
Coord C2 exon
chr7:38215002-38215142
Length
66 bp
Sequences
Splice sites
3' ss Seq
AATCTTATCTGCTTCAATAGGAA
3' ss Score
7.09
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
GAGTTGGAGAGGCATAGACTAGATATG
Seq A exon
GAACGAGAGAGGAGAAGACAGCATATGATGCTTATGAAAGCCATGGAAGCACGTAAAAAGGCGGAA
Seq C2 exon
GAAAAAGAGCGATTAAAGCAAGAGAAACGTGATGAAAAAAGGTTAAATAAAGAACGTAAACTAGAACAGCGAAGACTGGAACTAGAAATGGCAAAGGAGCTGAAGAAGCCTAATGAAGATATGTGCTTAGCAGACCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012579-'24-30,'24-29,27-30
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.698
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTTGGAGAGGCATAGACTAGA
R:
CTTCTGGTCTGCTAAGCACAT
Band lengths:
168-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]