HsaEX0007736 @ hg38
Exon Skipping
Gene
ENSG00000123636 | BAZ2B
Description
bromodomain adjacent to zinc finger domain 2B [Source:HGNC Symbol;Acc:HGNC:963]
Coordinates
chr2:159395769-159397389:-
Coord C1 exon
chr2:159397345-159397389
Coord A exon
chr2:159397074-159397100
Coord C2 exon
chr2:159395769-159395834
Length
27 bp
Sequences
Splice sites
3' ss Seq
GTGCCAACTCTTTCTACCAGGAG
3' ss Score
7.07
5' ss Seq
ATGGTATGG
5' ss Score
6.63
Exon sequences
Seq C1 exon
GAAAAAGAAATGAGAAGACAACAAGCTGTTCTTCTGAAACATCAG
Seq A exon
GAGTTGGAGAGGCATAGACTAGATATG
Seq C2 exon
GAACGAGAGCGAAGGCGACAACACATGATGCTTATGAAAGCTATGGAAGCTCGTAAAAAAGCAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123636_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=50=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.803 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGAAATGAGAAGACAACAAGCTGT
R:
TTCATAAGCATCATGTGTTGTCGC
Band lengths:
80-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development