MmuEX0007715 @ mm10
Exon Skipping
Gene
ENSMUSG00000026987 | Baz2b
Description
bromodomain adjacent to zinc finger domain, 2B [Source:MGI Symbol;Acc:MGI:2442782]
Coordinates
chr2:59932105-59933715:-
Coord C1 exon
chr2:59933671-59933715
Coord A exon
chr2:59933412-59933438
Coord C2 exon
chr2:59932105-59932170
Length
27 bp
Sequences
Splice sites
3' ss Seq
GTGCCAACTCTTTCTCCCAGGAG
3' ss Score
7.05
5' ss Seq
ATGGTATGG
5' ss Score
6.63
Exon sequences
Seq C1 exon
GAGAAAGAACTGAGAAGACAGCAGGCTGTCCTTCTGAAACACCAG
Seq A exon
GAGTTGGAGAGGCATAGACTAGATATG
Seq C2 exon
GAACGGGAGCGAAGGCGGCAGCATGTGATGCTTATGAAAGCTATGGAAGCTCGTAAAAAAGCAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026987_CASSETTE3
Average complexity
S*
Mappability confidence:
100%=50=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.775 A=1.000 C2=0.960
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGAACTGAGAAGACAGCAGGC
R:
CATCACATGCTGCCGCCTTC
Band lengths:
72-99
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types