DmeEX6010031 @ dm6
Exon Skipping
Gene
FBgn0033636 | tou
Description
The gene toutatis is referred to in FlyBase by the symbol Dmel ou (CG10897, FBgn0033636). It is a protein_coding_gene from Dmel. It has 6 annotated transcripts and 6 polypeptides (5 unique). Gene sequence location is 2R:11577485..11616045. Its molecular function is described by: protein binding; transcription factor binding; DNA binding. It is involved in the biological process described with: ATP-dependent chromatin remodeling; nervous system development; positive regulation of transcription by RNA polymerase II. 67 alleles are reported. The phenotypes of these alleles manifest in: trichogen cell; wing; dorsocentral bristle; wing vein L5; scutellar bristle. The phenotypic classes of alleles include: fertile; visible; partially lethal; lethal; viable. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 00-06 hour embryonic stages.
Coordinates
chr2R:11583015-11587582:-
Coord C1 exon
chr2R:11587538-11587582
Coord A exon
chr2R:11587097-11587138
Coord C2 exon
chr2R:11583015-11587025
Length
42 bp
Sequences
Splice sites
3' ss Seq
ACCAATCTTATTTTATCTAGGAA
3' ss Score
7.88
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
GAGAAAGAAAAGCGTCGTCAGGAGGCCATTTTAGCTAAGGAACAG
Seq A exon
GAACTACAGAAACAAAAAGAGATGCTGTTGGCTGCCGAAATG
Seq C2 exon
GAACGAGAACGTCGCCGCCAACACATGAGCCTCATTCGAATGTTGGAGCTTCGTCGGAAATTCGAGGATCGTGAAAAGAAGAAACACCAGCTGGTTCTAGACCGTTTGCTTCTGCGTGAGCGTCGTATGGCGGAGCGAAAACGAGATGCGGAGATTCTGCAGTTGATAAGGCGTCCCAATGAGGACTCCGAAATGCCACAAGAATTGGTAATCCCTGAACTGGATAGGATTGCCGGCAACCGACTTCCCGGCCAGGCAATGGCCGATTTGCTCATGGTCTTTGAATTCCTACATAACTTTGGGGAGACTCTAGGCTTTGACATGGAATCACTGCCGTCGCTTCAGAACCTGCACGATGCTTTAATGAGCGATAGCAACGCGGATGCGGAAGAGGAGTTGTTGTCGGTGATGACGCATCTATTGGTTTGTGCCATTGAGGATCCAGGTGTTCCCAATCCCGGCAGACACACCACTTTACTGGGACAATCGCTACGCAATGC
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0033636-'21-20,'21-18,22-20=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.933 A=0.607 C2=0.504
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0279112=DDT=WD(100=4.8),PF156121=WHIM1=WD(100=3.7),PF156131=WHIM2=WD(100=4.3),PF156141=WHIM3=WD(100=3.1)
Main Inclusion Isoform:
FBpp0111979
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
FBpp0087193, FBpp0305283, FBpp0305284
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCAGGAGGCCATTTTAGCT
R:
ACGCAGAAGCAAACGGTCTAG
Band lengths:
147-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)