GgaEX1010598 @ galGal4
Exon Skipping
Gene
ENSGALG00000012579 | BAZ2B
Description
bromodomain adjacent to zinc finger domain protein 2B [Source:RefSeq peptide;Acc:NP_990008]
Coordinates
chr7:36067774-36084739:-
Coord C1 exon
chr7:36084674-36084739
Coord A exon
chr7:36084004-36084048
Coord C2 exon
chr7:36067774-36067836
Length
45 bp
Sequences
Splice sites
3' ss Seq
ATACATTTCTTTTGTTTAAGGAA
3' ss Score
7.25
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GCAAAAAAGAAGAAGAAAGAAGAAGCAGCAAATGCTAAATTACTGGAGGCTGAAAAACGAATAAAG
Seq A exon
GAAAAAGAGATGCGAAGGCAACAAGCTGTTCTTCTCAAGCACCAG
Seq C2 exon
GATGATGGAGACCAGACAGTGAGTGTTGAAGAACTAGAGAAGCAGATTGAAAAACTGACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012579_MULTIEX3-2/11=1-11
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.955 A=0.800 C2=0.952
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0334410=Daxx=FE(5.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGAAGAAGAAAGAAGAAGCAGCA
R:
CTTTGTCAGTTTTTCAATCTGCTTCT
Band lengths:
124-169
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]