GgaEX1010598 @ galGal3
Exon Skipping
Gene
ENSGALG00000012579 | BAZ2B
Description
NA
Coordinates
chr7:38220068-38221076:-
Coord C1 exon
chr7:38221011-38221076
Coord A exon
chr7:38220341-38220385
Coord C2 exon
chr7:38220068-38220094
Length
45 bp
Sequences
Splice sites
3' ss Seq
ATACATTTCTTTTGTTTAAGGAA
3' ss Score
7.25
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GCAAAAAAGAAGAAGAAAGAAGAAGCAGCAAATGCTAAATTACTGGAGGCTGAAAAACGAATAAAG
Seq A exon
GAAAAAGAGATGCGAAGGCAACAAGCTGTTCTTCTCAAGCACCAG
Seq C2 exon
GAGTTGGAGAGGCATAGACTAGATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012579-'22-27,'22-25,23-27=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.955 A=0.800 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGAAGAAGAAAGAAGAAGCAGCA
R:
TCTAGTCTATGCCTCTCCAACTC
Band lengths:
84-129
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]